Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E12f
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 117 9e-28
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 0.55
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 27 0.96
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 3.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 3.9
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 5.1
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 5.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 6.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 8.9
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 117 bits (281), Expect = 9e-28
Identities = 54/104 (51%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Frame = +3
Query: 21 MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 194
MVN+PK R+TY +QYKK + AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 195 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMI 326
+VLRLEC CK ++Q+ LKRCKHFELGG+KK KG I
Sbjct: 61 KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAI 104
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 0.55
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 130 PWAACLSLDFLYCDTLCTLWHL 65
P A + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 27.5 bits (58), Expect = 0.96
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -2
Query: 211 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 32
L+VF FF+ G LR R+L S+ F + L TL+H + + + C G
Sbjct: 40 LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92
Query: 31 TFTIFEFVRP 2
F +F+ P
Sbjct: 93 FFNLFKVFYP 102
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 3.9
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = -3
Query: 243 NQHTQDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIY 64
NQ D W L W WT + ++Y + + R F VLCG
Sbjct: 1212 NQSNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRIFR---TPNFWAVLCGTI 1268
Query: 63 IFC 55
+ C
Sbjct: 1269 VSC 1271
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 429 KRRPVNCNTTHYRANWVPGPPSCRGLIY*KHLKL 328
+ +P N H + VPGPP+ L Y L +
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAFNELEYQSELDM 919
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 5.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 58 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 234
K +A K R H+ + + V ++ V SPNP S +R+K R+ S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 5.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 381 VPGPPSCRGLIY*KHLKLGSSVPFSSCHHQAQSACISSMQPVISPCNQHT 232
+PG S GL HL S + H Q+Q +S+ P+IS H+
Sbjct: 348 LPGLASIDGLQALPHLDFSDSAVTNQSHSQSQ----NSLHPLISQSETHS 393
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 94 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 180
ST+ PR T E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 106 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 189
P+K + P+V +M +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,737
Number of Sequences: 5004
Number of extensions: 33622
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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