Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E12f
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   122   2e-28
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   122   2e-28
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    28   2.6  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    28   2.6  
Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z74032-4|CAA98463.2|  404|Caenorhabditis elegans Hypothetical pr...    27   7.9  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  122 bits (293), Expect = 2e-28
 Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
 Frame = +3

Query: 21  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 197
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 198 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMI 326
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+I
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVI 103


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  122 bits (293), Expect = 2e-28
 Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
 Frame = +3

Query: 21  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 197
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 198 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMI 326
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+I
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVI 103


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 109 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVRP 2
           ++ + C+T   L    FL +V  C+GT T  +   P
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLDLFLP 771


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 109 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVRP 2
           ++ + C+T   L    FL +V  C+GT T  +   P
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLDLFLP 771


>Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical
           protein T15D6.5 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 31  YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 210
           Y  +AGRT    +  + +     KS R   LP++++       + +V+  P S  R+K L
Sbjct: 86  YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145

Query: 211 RK 216
           RK
Sbjct: 146 RK 147


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 171 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 31
           +H    V+  NV+ P Q   P     V+  VLC I   C  S  + +
Sbjct: 38  NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 85  RYHSTKSPRKGTLPRV-EDVMIVNSR 159
           +Y +TKS R+G LP + ED++    R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637


>Z74032-4|CAA98463.2|  404|Caenorhabditis elegans Hypothetical
           protein F35B12.5 protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +1

Query: 34  QNSAGRTAKNVNATKYTRYHSTKSP--RKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKP 207
           Q    R  + +NA    +     S   +K T+P+ + +  V         +P   R+QKP
Sbjct: 149 QEETARRQEELNAQNLVKMQELMSNFFQKITIPKQQAIEPVEKDKENFHESPRQSRQQKP 208

Query: 208 LRKLCSVLSVL 240
             K+ S   V+
Sbjct: 209 ASKIASAREVI 219


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 222 LRLECADCKVRSQVALKRCKHFELGGDKK 308
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


>AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical
           protein D1079.1 protein.
          Length = 113

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 123 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSF 7
           QR++P+ TF   +  +LC +YI C    S +V  +  FL +F
Sbjct: 30  QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,111,191
Number of Sequences: 27780
Number of extensions: 210443
Number of successful extensions: 674
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)