Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    50   2e-07
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    41   1e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    31   0.079
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   2.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   3.9  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    25   5.2  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    25   5.2  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.8  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   9.0  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)
 Frame = +2

Query: 17  GNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRL 196
           G LKNL IL    N +  +P ELG L  LRE+ L  N + V+P E+GTL       +L +
Sbjct: 201 GKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTL---FQLKILGI 257

Query: 197 EGNFWVPPIEDQLK 238
           EGN    P++D  K
Sbjct: 258 EGN----PLQDVYK 267



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +2

Query: 41  LSMRENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPP 220
           L +  N+L  +P E+G+L  L  L   GN +  +PPE+G   L   + VL  +    V P
Sbjct: 186 LYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGL--LTELREVLLFDNMISVIP 243

Query: 221 IE 226
            E
Sbjct: 244 AE 245



 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +2

Query: 62  LIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 205
           L  V  +L + + L EL++  N L  LPPEIG L    N  +L   GN
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKL---KNLVILDASGN 214


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +2

Query: 17  GNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDL 169
           G L NL++LS+ +N L E+P  +  +  L  L ++ N +V  PP I   DL
Sbjct: 118 GALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHIVFPPPHIANNDL 168


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 20  NLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRL 133
           +L++L  L +  N+L E+P  LG+L +L  L+L  N++
Sbjct: 354 SLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 164 DLASNK-SVLRLEGNFWVPPIEDQLKLGPSHVL 259
           +LA  K ++L ++  F  PPI+D L LG  +V+
Sbjct: 175 ELAKKKGAILVVDSTFAPPPIQDALVLGADYVV 207


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect(2) = 3.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 317 PPPPPQTVDKSKKA 358
           PPPPP+ ++ S K+
Sbjct: 373 PPPPPELLNHSPKS 386



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 263 YLRSETYKVLYSRHMSAKPPPPP 331
           +L  E+ +  +S    + PPPPP
Sbjct: 353 HLNDESSRSRWSNISYSPPPPPP 375


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 261 SSTWDGPSLSWSSMGGTQKLPSSLSTDLLLARSNVPISGG 142
           +S WD  +   S + G   L  SLS D+   RSN P+  G
Sbjct: 165 TSDWDEQNEYVSEVEGDYNLLGSLSNDIQF-RSNPPVISG 203


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 65  IEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWV--PPIEDQLK 238
           +++P E G++  L++ H+   + +  P  I   D +SNKS   + G F V  P  E  + 
Sbjct: 51  VDIPAEDGEMGILKD-HVPMIQCLK-PGVISVTDESSNKSKYFISGGFAVQQPSNELSIT 108

Query: 239 LGPSHVLDYLRSETYKVLYSRH 304
           +  ++ L+   S     L  +H
Sbjct: 109 VPEAYKLEDFSSSVANQLLEKH 130


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 296 SRHMSAKPPPPPQTVDKSKKASRA 367
           SRH SA PP PP+ +     AS A
Sbjct: 322 SRHGSATPPHPPKIMPDDISASLA 345


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 53  ENDLIEVPRELGQLA 97
           ENDL EVP EL +LA
Sbjct: 145 ENDLDEVPTELNELA 159


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 175 AGEVQCSDLRRQHDEAVPLQVQLAEARQLPQLPG 74
           A +VQCS  R  HD A+  ++  +E   +P   G
Sbjct: 29  AFKVQCSGCREIHDNAI--EISRSETHSIPGSKG 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,308
Number of Sequences: 5004
Number of extensions: 29130
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)