Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.067
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 20  NLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRL 133
           N  +L+ L +  N+L  VP  L  LA L+ L L  NR+
Sbjct: 429 NCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRI 466



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 92   LARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFW 211
            L  L  L L GNRLV  P  +  + L +    L L  N W
Sbjct: 889  LRSLEILRLSGNRLVTFP--VWQVTLNARLVELSLGSNPW 926


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 275 ETYKVLYSRHMSAKPPPPPQTVDKSKKASR 364
           ET+ +LY     A   PPP   D  K   R
Sbjct: 109 ETFSLLYYEFDVATKEPPPWETDSYKLIGR 138


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 314 KPPPPPQTVDKSKKASRA 367
           +PP PP +++ +  ASR+
Sbjct: 906 EPPQPPNSLETAMVASRS 923


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 314 KPPPPPQTVDKSKKASRA 367
           +PP PP +++ +  ASR+
Sbjct: 902 EPPQPPNSLETAMVASRS 919


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 317  PPPPPQTVDKSKKA 358
            PPPPP+  D++  +
Sbjct: 1860 PPPPPRNHDQNNSS 1873


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,482
Number of Sequences: 438
Number of extensions: 2488
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)