Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.73 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   1.3  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    27   1.3  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   1.7  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   1.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   3.9  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    26   3.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.9  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   5.2  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    25   5.2  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   5.2  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   6.8  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    25   9.0  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   9.0  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 174 QLRSVSPPQKPVLLAKPSSIPVKATEK--TAKTGVSSKIPIVSALKSSSQENLAESRFSL 347
           QL     PQ    +   S+ P +A E+  T  +   S IP    +KSS+   +     S 
Sbjct: 110 QLPPPPQPQSHPNVTVISASPARAIEQQPTILSSTDSNIPRPGTVKSSASPFVPNQNPSA 169

Query: 348 PRSPPPQY 371
           P  PP +Y
Sbjct: 170 PPPPPQEY 177


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 195 PQKPVLLAKPS-SIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFS 344
           P  P+   +P+ SIP + ++   ++G  +  P V  L S   +N AES FS
Sbjct: 95  PLAPIGARQPNPSIPQQFSKPINESGTGTMGPAVGELTSPVMKNRAESIFS 145


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +3

Query: 120 IVTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPSS 230
           ++  +  E +R   +++++ + ++PPQ P  +A P+S
Sbjct: 39  VINHSPSETKRRDPVEELRYKPLTPPQDPRKVAPPNS 75


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 126 TSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPSSIPVKATEKTAKTG 269
           T+ + E    S      + SVSPP+  V  A+   IP      +A+TG
Sbjct: 59  TNRECEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTG 106


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 325 WLRVDSLCRDLPLPNTGAPVTFP*PRSRV 411
           WL+ +S C  LP+P T  P T P  RS V
Sbjct: 304 WLKKNSFCLYLPIPLTSIPST-PSIRSHV 331


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +3

Query: 6    KKTKTTAS---DPKKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQ 176
            ++T+T+AS   DPKK        R+S  K   +T  S   +  + +D       +  +  
Sbjct: 862  RETRTSASNESDPKK-----STQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPA 916

Query: 177  LRSVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAE 332
            L+ V     P    K +    + TEKTA T VSS  P+     +   +++ E
Sbjct: 917  LKPVEGTADP----KSTKRNHQETEKTADTDVSSTEPVKRQKTADVNDDVGE 964


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 420  FWSYS*SRLRKCYRSSRIGEGEIAAKRIYSQPSSPGW 310
            FW Y    +R+ YR+ R+ E +   + I +   SP W
Sbjct: 1285 FWPYDVDIIRESYRTKRLHELD-EEEEIENAEQSPDW 1320


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 102 ESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKP-SSIPVKATEKTAKTGVSS 278
           + P+   +TS+   N+ + +   +     SPP  P + + P +S P  +  K  K  V  
Sbjct: 558 QEPEPENITSSQYPNQDVIKEIPVTASETSPPHAPAVSSTPVTSAPPVSQTKVTKVSVPK 617

Query: 279 K 281
           K
Sbjct: 618 K 618


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 180 RSVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFS 344
           +SV   +K  L  KP+S   KA + + ++  SSK P  SA     ++ +++ + S
Sbjct: 174 KSVKAKKKLRLAEKPASNNSKAGKSSQESKKSSKAPAESAAAVIKEDKVSDRKKS 228


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/62 (22%), Positives = 26/62 (41%)
 Frame = +3

Query: 180 RSVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFSLPRSP 359
           R   P ++   LA  + +P   + ++  +   SKIP+      +   N+ +   SLP   
Sbjct: 354 RRYEPVKRQDTLAS-NHVPSAPSNESVSSAAPSKIPVPEEASINEHSNITDEAVSLPEPV 412

Query: 360 PP 365
            P
Sbjct: 413 YP 414


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 249 EKTAKTGVSSKIPIVSALKSSSQENLAESR 338
           E++ ++  SS  P  SA  SSS ENL + +
Sbjct: 230 ERSGRSSSSSHSPSPSASSSSSSENLLQDK 259


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 84  FRTATYESPKGTIVTSTDLENRRLSELDQMQ-LRSVSPPQKPVLLAKPSSIPVKATEKTA 260
           F+ A   S K     S    N    EL  M    + S  Q+P LL +PS IP+  T  TA
Sbjct: 118 FKDAKSSSEKKQFNNSQSQSNNS-QELSLMNNAYNKSSAQQPNLLLQPSYIPMTQTATTA 176


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 183 SVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFS 344
           S S   +  L   PSS+P     K + T + SK  IVS   + +    +  R S
Sbjct: 101 SKSQSGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSS 154


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 87  RTATYESPKGTIVTSTDLENRRLSELDQMQLRSV-SPPQKPVLLAKPSSIPVKATEKT 257
           R   Y SP+   + +  +++   + L +  +  + +PP KP  L+   S P  + +K+
Sbjct: 125 RALRYLSPESQRIKNAKMKSPISTHLAKYSIHHMGTPPSKPSFLSSSVSSPASSKQKS 182


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 186 VSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFS 344
           VSP  +P+    P+S P K  E    + +SS +P     +S S  N A+S  S
Sbjct: 186 VSPSSQPLDRFSPASFPSK--ETLTSSSLSSSVP-----RSVSLSNFADSNTS 231


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 26/110 (23%), Positives = 39/110 (35%)
 Frame = +3

Query: 39  KRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLLA 218
           K    +DL  N H         +    +VT+  ++ +  S L Q      S  Q P    
Sbjct: 425 KSQRSHDLAANEHAPILNPKNSALNPRLVTNDRVKVKSPS-LIQSSTGYGSMSQSPSRSD 483

Query: 219 KPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFSLPRSPPPQ 368
            PS I     E  A     S I +    KSS  +  +    + P + PP+
Sbjct: 484 LPSKISRVNAELQAHGSQRSSIDVSKENKSSVADGPSSQAHNGPSTQPPE 533


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 476 FPFSTV*PCFDLKFSAARTSGATLDRGYGNVTGAPV 369
           F   T  P   L FS++ +    L  G GNV  +PV
Sbjct: 62  FTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPV 97


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 92  GDVRISKGHNSDEHGSGKPEAIGARSDAA 178
           GD R +KG  S  HGSG    +      A
Sbjct: 297 GDFRQAKGSASHPHGSGSSNGVAPNGKRA 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,983
Number of Sequences: 5004
Number of extensions: 37591
Number of successful extensions: 127
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)