Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 35 0.034
08_02_0991 - 23377621-23378364 32 0.32
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 30 1.3
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 29 3.0
08_01_1065 - 10868890-10869999,10870925-10871004,10871224-108712... 28 5.2
01_06_0399 + 29029628-29029854,29029967-29030119,29030516-29030528 28 5.2
01_01_0957 + 7516314-7517489 28 5.2
01_01_0051 + 389051-389623 28 5.2
09_06_0287 + 22047404-22048409,22048754-22049967 27 6.9
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 27 6.9
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 27 6.9
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 27 9.1
07_03_1501 - 27005542-27005976,27006657-27008660 27 9.1
05_06_0037 + 25095452-25096049,25097093-25097280,25097926-25098429 27 9.1
02_03_0088 - 15085149-15085499,15085656-15085751 27 9.1
01_06_1106 + 34563368-34563679 27 9.1
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 27 9.1
01_06_0396 + 29014101-29014327,29014438-29014594 27 9.1
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 35.1 bits (77), Expect = 0.034
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +3
Query: 93 ATYESPKGTIVTSTD-----LENRRLSELDQMQLRSVSP-PQKPVLLAKPSSIPVKATEK 254
AT P+ T T+T + RLS + R P P+ P K + +P A
Sbjct: 138 ATLSRPRTTPRTTTPSPAGAAASPRLSSSNPDARRRAPPQPEPPSTPRKENRVPSAAAAS 197
Query: 255 TAKTGVSSKIPIVSALKSSSQENLAESRFSLPRSPPP 365
TA + ++ +S +SS +E+ + R S R+PPP
Sbjct: 198 TAAATATPRLRALSRSRSSLKESASSVRDSPRRAPPP 234
>08_02_0991 - 23377621-23378364
Length = 247
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +3
Query: 24 ASDPKKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQK 203
A+ P KRH L ++ R + S ++ ST E + EL +++ +
Sbjct: 152 AAAPSKRHEGSWL-FSAPASLRGSPVASGHLSVKVSTSSEESTMEELHSAVQAAIAHCKN 210
Query: 204 PVLLAKPSSIPVKATEKTAKTGVSS 278
+ A PSS P A T TGV++
Sbjct: 211 SIAAAAPSSRPAAAAAATTPTGVNA 235
>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
Length = 740
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 162 LDQMQLRSVSPPQKPVLLAKPSSIPVKATEKT-AKTGVSSKIPIVSALKSSSQENLA 329
LD + L +V+PP L S PVK ++T K V S P+V+ SS+ LA
Sbjct: 580 LDPVPL-AVAPPPSVFLALTDSDAPVKPAKRTYKKRAVGSATPVVATGLRSSKRLLA 635
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 125 DEHGSGKPEAIGARSDAAEIGQSAPKTGVARETE 226
D+HGS + +G SDAA+IG ++ + +E
Sbjct: 546 DQHGSVRSIGVGISSDAADIGSEVRESLIGGSSE 579
>08_01_1065 -
10868890-10869999,10870925-10871004,10871224-10871283,
10871490-10871678,10871931-10872092,10872989-10873100
Length = 570
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +3
Query: 135 DLENRRLSELDQMQLRSVSP-----PQKPVLL---AKPSSIPVKATEKTAKTGVSSKIPI 290
DL+ RRL D + L+++ P P P++L A PS IP T ++T ++P+
Sbjct: 214 DLDERRLISSDSLFLKAIFPTLNVSPSSPLILAGGAGPSCIPT-TTIAGSRTAAPFQVPV 272
>01_06_0399 + 29029628-29029854,29029967-29030119,29030516-29030528
Length = 130
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 176 LHLI*LR*PPVFQIRARHYCALWRFVRRRSELDMAVSGQV 57
LHL+ + P VF + AR Y ++RF R L M ++
Sbjct: 53 LHLLAMHGPDVFTVLARKYGPVFRFHMGRQPLVMVADAEL 92
>01_01_0957 + 7516314-7517489
Length = 391
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/75 (25%), Positives = 28/75 (37%)
Frame = +3
Query: 54 YDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPSSI 233
YDL S + A + +T EN + + + + PPQ P
Sbjct: 81 YDLAPASWSEVSKALEDIKPALSSNTTTTENAKKKTKKKKKKQPAPPPQPPTTTTTVLPE 140
Query: 234 PVKATEKTAKTGVSS 278
PVKA E AK ++
Sbjct: 141 PVKAIEAAAKKAAAA 155
>01_01_0051 + 389051-389623
Length = 190
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 243 ATEKTAKTGVSSKIPIVSALKSSSQENLAESRFSLPRSPPPQY 371
++ ++++ SS + SSS ++LA R SPPPQY
Sbjct: 110 SSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQY 152
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 213 LAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFSLPRSPPPQ 368
+A P+ + TE TGV +S + S Q L S P+ PPPQ
Sbjct: 176 IAAPAGSTMSLTEDRRCTGVGCCQMPISVGRDSYQVRLRRLNPSPPQPPPPQ 227
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 234 PVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFSLPRSPPPQYG 374
PV+ E++ G + P+V + S + L+ S PRSPPP YG
Sbjct: 3 PVQTPEQS--NGSLTLNPVVQRVLSRGKSLLSPST---PRSPPPSYG 44
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 177 LRSVSPPQKPVLLAKPS--SIPVKATEKTAKTGVSSKIPIV 293
L + PP P L+ PS S+P AT ++ + + S I IV
Sbjct: 180 LLPLPPPPPPELVVYPSVPSLPPSATPPSSSSSIGSSIAIV 220
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 27.1 bits (57), Expect = 9.1
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 30 DPKKRHSDYDLPRNSHIKFRTATYE--SP-KGTIVTSTDLENRRLSELDQMQLRSVSPPQ 200
D K + L ++FR E SP K VT D+ + + + +L ++P +
Sbjct: 109 DVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLL-INPEE 167
Query: 201 KPVLLAKPSSIPVKATEKTAKTGVSS-KIPIVSALKSSSQENLAESR 338
P+L+A+PS+ + EK A+ K+P + K++ + A R
Sbjct: 168 HPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGR 214
>07_03_1501 - 27005542-27005976,27006657-27008660
Length = 812
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 92 GDVRISKGHNSDEHGSGKPEAIGARSDAAEIGQSAPKTGVARETEQH 232
G++R H + HG + AIG +D A G + K G + H
Sbjct: 524 GNIRKVLQHGGERHGKMQLTAIGVLADLAIDGDAKEKIGCTGDMIAH 570
>05_06_0037 + 25095452-25096049,25097093-25097280,25097926-25098429
Length = 429
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 110 KGHNSDEHGSGKPEAIGARSDAAEIG 187
+G + +E + P G RSD AEIG
Sbjct: 100 EGRDGEEESAQSPRIAGIRSDLAEIG 125
>02_03_0088 - 15085149-15085499,15085656-15085751
Length = 148
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 62 AQKQPYQVQNGDVRISKGHNSDEHGSGKPEAIGARSDAAEIGQSAPKTGVARE 220
+QK PY + +G +G D+ + + R DAAE G+ + G A E
Sbjct: 46 SQKLPYNMISGAGATCRGRGLDDEAEVEARDVVERLDAAEEGRVWGRDGGAVE 98
>01_06_1106 + 34563368-34563679
Length = 103
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 219 SRATPVFGAD*PISAASDLAPIASGFPDPCSSLLCPLEIRTSP 91
S ATP AD + AAS AP G P +S P E+R P
Sbjct: 13 SAATPTSTAD-RLGAASSQAPPRPGRVPPSASAPPPAELRHGP 54
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 112 FGDSYVAVLNLIWLFLGKS*SEWRFFGSEAVVLVFL 5
+GDS + ++N++W LG + + WR V+ +L
Sbjct: 58 YGDSEI-IMNVLWQRLGNTLANWRHVYKALAVIEYL 92
>01_06_0396 + 29014101-29014327,29014438-29014594
Length = 127
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 176 LHLI*LR*PPVFQIRARHYCALWRFVRRRSELDMAVSGQV 57
LHL+ + P VF + R Y ++RF R L M ++
Sbjct: 53 LHLLAMHGPDVFSVLTRKYGPIFRFHMGRQPLVMVADAEL 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,815
Number of Sequences: 37544
Number of extensions: 277642
Number of successful extensions: 1055
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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