Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16859| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  30   1.0  
SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)              30   1.0  
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)               30   1.3  
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)                       29   2.3  
SB_27814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_5013| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             28   5.4  
SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)                 27   7.1  
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     27   7.1  
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_36239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)                27   9.4  
SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)              27   9.4  

>SB_16859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +3

Query: 36  KKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLL 215
           K+RHS      N+   F+  ++  P  T  TST   N+ L +LD+ +      P+K  L 
Sbjct: 17  KRRHSSTTSQENNLKAFKGISHNGP--TKTTSTKSNNKPL-KLDKSKRGKTRTPKKSSLA 73

Query: 216 AKPSSIP--VKATEKTAKTGVSSKIPI 290
              SSI   +    KT++T   S + +
Sbjct: 74  GSSSSIKNFINGGSKTSRTFNGSSLEL 100


>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 3   VKKTKTTASDPKKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLR 182
           ++  KT +  PK R  +     +  +K R+    S K   V S  +ENR   +L+   ++
Sbjct: 622 IRSRKTKSRSPKSRFVESRSVESQSVKSRSVKSRSVKSRSVKSRSVENRNKEKLEHDPVK 681

Query: 183 SVSPPQK 203
               P K
Sbjct: 682 YKHEPAK 688


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = +3

Query: 156  SELDQMQLRSVSPPQKPVLLAKPSS----------IPVKATEKTAKTGVSSKIPIVSALK 305
            S + +  + S+  P +P L   PSS          I +++T +        +IP +S LK
Sbjct: 1694 SSIAKNSVHSIPSPSRPSLNIAPSSTLTPSTAGHTIDIRSTNRVHSRAQEGQIPTLSTLK 1753

Query: 306  SSSQENLAESRFSLPRSPP 362
            ++S           P SPP
Sbjct: 1754 TTSTSTSTTKYIPPPHSPP 1772


>SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)
          Length = 103

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 107 SKGHNSDEHGSGKPEAIGARSDAAEIGQSAPKTGV 211
           +KG+N   H SG P  IG+ +D + I  + P  G+
Sbjct: 22  AKGNNKTGHISGSPRRIGSLADESSIRTNQPIIGI 56


>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
          Length = 684

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +3

Query: 36  KKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLL 215
           KK+H D D  ++ H   +  T +  K   +   + E   L  L        S P+  + L
Sbjct: 474 KKKHKDKDKTKDKHKTKKVETQDKHKRKKIKQENKE-FMLDPLSIPGNSGSSIPRIKLKL 532

Query: 216 AKPSSIPVKATEKTAKTGVSSKIPI 290
             PS+  + AT K AK   + KI I
Sbjct: 533 EPPSTTDMLATTKEAKQPTAQKIVI 557


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 397 PRSRVAPEVRAA-ENFKSKHGHTVENGNLFVQAILNLR 507
           P +++  E+RA  E   S  GHTVE  N  ++ + +LR
Sbjct: 665 PNAKIIRELRAEIERLNSLGGHTVEESNKALEEVASLR 702


>SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)
          Length = 754

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 135 DLENRRLSELDQMQLRSVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKI 284
           D+E   L ++   ++  +SPP+ P   AK    P +  EK  +T +  K+
Sbjct: 418 DMEKHVLRQMQGRRITGISPPESPRGAAKAWYEPTRKEEKKEETIMELKV 467


>SB_27814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 48  SDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLS 158
           SD D  R +H+ FRT         +VT TD+   +LS
Sbjct: 85  SDKDPNRGNHVYFRTTDGVHTIPCVVTDTDISETKLS 121


>SB_5013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 48  SDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLS 158
           SD D  R +H+ FRT         +VT TD+   +LS
Sbjct: 9   SDKDPNRGNHVYFRTTDGVHTIPCVVTDTDISETKLS 45


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 177 LRSVSPPQKPVLLAKPSSIP--VKATEKTAKTGVSSKIPIVSALKSSSQEN 323
           +  VS P  PV      SI   +K+ EKT K  ++ KIP  ++L      N
Sbjct: 44  IEDVSDPPSPVAAPPSPSIARQLKSNEKTFKVCITPKIPPTASLSKVKPTN 94


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 30  DPKKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPP 197
           DPKK+H D + P    +   + T  S     +     E+R +S+ D  +L+  SPP
Sbjct: 512 DPKKKHKDANSPYGPALPPFSGTLYS--DLEIARQKSEDRLVSKKDSRRLKDSSPP 565


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 228 SIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFSLPRS 356
           +IP +  E+T K  VS+   I   +K++  E +  ++   PRS
Sbjct: 558 AIPRREEEETKKAAVSAGASIAKHIKNAIAEQVKRAKTGFPRS 600


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 285 PIVSALKS-SSQENLAESRFSLPRSPPPQYG 374
           P +S   S SS+ NL + RF +P  PP  YG
Sbjct: 888 PTLSCTGSVSSEANLYDPRFLVPTHPPKAYG 918


>SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)
          Length = 435

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 309 SSQENLAESRFSLPRSPPPQYG 374
           SS+ NL + RF +P  PP  YG
Sbjct: 114 SSEANLYDPRFLVPTHPPKAYG 135


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 111 KGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPI 290
           K T  T +++ +  +S L    +   S     +L  K +SIPV +   +     SS +P+
Sbjct: 462 KNTTFTPSEIVSPSISTLHTSTVELSSTGNVSMLTLKTNSIPVTSPAPSTSLPASSTLPV 521

Query: 291 V---SALKSSSQENLAES 335
           +   S  ++ S +++A S
Sbjct: 522 LPTSSLAETPSTQSVASS 539


>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 1   RSRKPKRPPQIQRNATPTMTCPETAISSSE 90
           R R  KR PQ+    TP +TCP+   S  E
Sbjct: 531 RVRPRKRYPQVCLQNTPEITCPKDTGSDDE 560


>SB_36239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 105 SPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPSS-IPVKATEKTAKTGVSS 278
           S  G +++  D+E+  ++ LD+  L+   PP+KP  +AKPS+ + V+       TG S+
Sbjct: 52  SLNGKVISGDDVESLAIN-LDE--LKKTRPPKKPE-VAKPSTKVVVRKARIKTDTGQSA 106


>SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)
          Length = 605

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 33  PKKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQL 179
           PK+RH  +     + I ++  T      T VT+  L    L EL   +L
Sbjct: 430 PKRRHRQWQAGNKTRINWKKETSPHHAKTFVTTLPLVQSPLEELQNCEL 478


>SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)
          Length = 498

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 95  DVRISKGHNSDEHGSGKPEAIGARSDAAEIGQSAPKTGVARE 220
           D ++S   NSD+H   KP  +G +     +  + P T   R+
Sbjct: 229 DPKVSAPGNSDDHSPSKPIPVGGKVLRRSVSFTEPDTSPHRK 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,535,824
Number of Sequences: 59808
Number of extensions: 284966
Number of successful extensions: 1021
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)