Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   1.9  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   5.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.8  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 413 LQKSERRKILNQNMVTLLRMGICSFK 490
           L+K  R+K LNQN + +  +  CS K
Sbjct: 6   LKKKRRKKNLNQNQMMIWALD-CSIK 30


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 1   RSRKPKRPPQIQRNATPTMTCPETAISSSERRRTNLQRAQ 120
           R+R+ KR        TP    P TA S  +  R   + A+
Sbjct: 2   RTRRVKRSDGRGNGGTPEEKRPRTAFSGEQLARLKREFAE 41


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  IQRNATPTMTCPETAISSSERR 96
           I+++   T TC + AISS+  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  IQRNATPTMTCPETAISSSERR 96
           I+++   T TC + AISS+  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  IQRNATPTMTCPETAISSSERR 96
           I+++   T TC + AISS+  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  IQRNATPTMTCPETAISSSERR 96
           I+++   T TC + AISS+  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  IQRNATPTMTCPETAISSSERR 96
           I+++   T TC + AISS+  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  IQRNATPTMTCPETAISSSERR 96
           I+++   T TC + AISS+  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  IQRNATPTMTCPETAISSSERR 96
           I+++   T TC + AISS+  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,860
Number of Sequences: 438
Number of extensions: 3027
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)