Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E10f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8) i... 29 1.4
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ... 29 1.4
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 29 1.9
At4g31880.1 68417.m04531 expressed protein 29 1.9
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 1.9
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 2.5
At3g22190.1 68416.m02800 calmodulin-binding family protein conta... 29 2.5
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 28 3.3
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac... 28 3.3
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac... 28 3.3
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain... 28 3.3
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 28 4.4
At3g57120.1 68416.m06359 protein kinase family protein contains ... 28 4.4
At1g31940.1 68414.m03925 expressed protein 28 4.4
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 27 5.8
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 27 7.7
At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta... 27 7.7
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 27 7.7
At4g34440.1 68417.m04894 protein kinase family protein contains ... 27 7.7
At4g18740.1 68417.m02769 expressed protein 27 7.7
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 27 7.7
>At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8)
identical to SUVH8 [Arabidopsis thaliana] GI:13517757;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 755
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 1 RSRKPKRPPQIQRNATPTMTCP--ETAISSSERRRTN 105
RSRKPK+P N+ ++CP ++ I+ +ER N
Sbjct: 225 RSRKPKKPKADDPNSKMVISCPDFDSRITEAERESGN 261
>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
thaliana}
Length = 729
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +3
Query: 123 VTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSAL 302
+ ST + +RR + Q ++ + + P+ +A P IP+ ATE++ + +S K V A
Sbjct: 3 IFSTFVFHRRQQIFNLRQFQTTTILRNPISIA-PIQIPMDATEQSLRQSLSEKSSSVEA- 60
Query: 303 KSSSQENLAESRFSLP 350
+ ++ L SR + P
Sbjct: 61 QGNAVRALKASRAAKP 76
>At5g27650.1 68418.m03313 PWWP domain-containing protein
hypothetical protein F22F7.12 - Arabidopsis thaliana,
EMBL:AC009606
Length = 1072
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +3
Query: 48 SDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPS 227
+ + R ++FR+ Y+ + +EN R ++ P KPV K +
Sbjct: 660 ASFGTARKFFLRFRSLNYQKSLSVSSSDATVENARDTK-----------PSKPVKTVKRT 708
Query: 228 SIPVKATEKTAKTGVSSKIPIVSALKSSSQ 317
P KA +K + +IP LK ++Q
Sbjct: 709 EDPSKAGKKRLSSDRQDEIPSAKKLKKTNQ 738
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 114 GTIVTSTDLENRRLSELDQMQLRSVSPPQKPVLLAKPSSIPVKATEKTAKTGV-SSKIPI 290
G+ + D+ + S + + P K +K S PVK+ +KTG +K
Sbjct: 766 GSSRSKKDISSVSKSGKSKASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGS 825
Query: 291 VSALKSSSQENLAESRF-SLPRSPPP 365
S S ++E+ +ES P+ P P
Sbjct: 826 ASTPASKAKESASESESEETPKEPEP 851
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 399 RLRKCYRSSRIGEGEIAAKRIYSQPSSPG 313
RL Y S G+G+ + YSQPSSPG
Sbjct: 391 RLMLEYAGSERGQGDTDLESNYSQPSSPG 419
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +3
Query: 12 TKTTASDPKKRHSDYDLPRNSHIKFRTATYESP---KGTIVTSTDLENRRLSELDQMQLR 182
TK A D + SD + I ++P + + ++ LE LSEL+ + +
Sbjct: 447 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSNARLELANLSELELVTID 506
Query: 183 SVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSK 281
+K +L PS+ P +EK++K SS+
Sbjct: 507 GSPSSEKLFVLWNPSAPPTSKSEKSSKVVSSSE 539
>At3g22190.1 68416.m02800 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 400
Score = 28.7 bits (61), Expect = 2.5
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +3
Query: 174 QLRSVSP-PQKPVLLAKPSSI---PVKATEKTAKTGVSSKIPIVSALKSS-SQENLAESR 338
Q++SVS P L++ SS P ++ ++ G+SS IP+VS KS ++++LA
Sbjct: 283 QIKSVSKMPNTSNLVSGVSSQMTGPCQSDGDSSSPGISSSIPVVSKAKSKPAKDDLAVEV 342
Query: 339 FSLPRSPP 362
S P + P
Sbjct: 343 NSRPGAGP 350
>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
identical to cohesion family protein SYN3 [Arabidopsis
thaliana] GI:12006362; supporting cDNA
gi|12006361|gb|AF281155.1|AF281155
Length = 693
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 63 PRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQL 179
PR+S+I F T TY SP+ T++++ R S L + ++
Sbjct: 199 PRDSNIAFDTGTY-SPRNVTEEFTEVQDPRQSNLTEERI 236
>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +3
Query: 9 KTKTTASDPKKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSV 188
K K ++DP KR D N + R T + P G V S D ++D + +
Sbjct: 412 KGKIISTDPHKRKLSVDSSENQSPQKRLITMDGPDG--VHSQDQSGSAPMQVDN-PVEND 468
Query: 189 SPPQKPVLLAKPSS 230
+PPQ V +PSS
Sbjct: 469 NPPQNSV---QPSS 479
>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +3
Query: 9 KTKTTASDPKKRHSDYDLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQMQLRSV 188
K K ++DP KR D N + R T + P G V S D ++D + +
Sbjct: 412 KGKIISTDPHKRKLSVDSSENQSPQKRLITMDGPDG--VHSQDQSGSAPMQVDN-PVEND 468
Query: 189 SPPQKPVLLAKPSS 230
+PPQ V +PSS
Sbjct: 469 NPPQNSV---QPSS 479
>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471;contains Pfam PF00917: Meprin And
TRAF-Homology (MATH) domain
Length = 1052
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 93 ATYESPKGTIVTSTDLENRRLSELDQMQLRSVSPPQKPVL-LAKPSSIPVKATEKTAKTG 269
AT +V +D++++ + MQ S +P Q P +++PSS P+ + +
Sbjct: 721 ATGPPSSSQVVLPSDIQSQTVGLRADMQKLS-APKQPPATTISRPSSAPIIPAMRPSPIT 779
Query: 270 VSSKIPIVSALKSS 311
VSS + ++L S
Sbjct: 780 VSSSVQTTTSLPRS 793
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 189 SPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAESRFSLPR 353
+PP P + PS P +T A G SS IPIV+ L+ + ++S +LP+
Sbjct: 10 TPPSTPPSSSTPS--PSSSTTNAAPLG-SSVIPIVNKLQDIFAQLGSQSTIALPQ 61
>At3g57120.1 68416.m06359 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 456
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +3
Query: 147 RRLSELDQMQLRSVSPPQKPVLLAKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENL 326
R S Q Q R S + P + + T + KTG SS ++ +S+ +L
Sbjct: 32 RTRSRPSQSQGRHPSTRRSPST-SNTGTTTTTTTSNSNKTGASSSSSGAASSSVASRTSL 90
Query: 327 AESRFSLPRSP 359
A R SLP +P
Sbjct: 91 ASLRESLPENP 101
>At1g31940.1 68414.m03925 expressed protein
Length = 158
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 10 KPKRPPQIQRNATPTMTCPE 69
KP RPPQ R+ P+++ PE
Sbjct: 118 KPPRPPQPNRSILPSLSAPE 137
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 437 FSAARTSGATLDRGYGNVTGAPVL 366
++ R SG T+D G+G + APVL
Sbjct: 131 YAVGRISGCTVDIGHGKIDIAPVL 154
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 448 KHGHTVENGNLFVQAILNLRP 510
+HGH +N N+ +Q++ NL P
Sbjct: 468 EHGHHFDNSNMGIQSMPNLHP 488
>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
putative contains similarity to 26S proteasome
non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
Length = 227
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 409 VAPEVRAAENFKSKHGHTVENGNLFVQAILNLRPTT 516
V E R +S+HG E N+ +Q + ++RPT+
Sbjct: 59 VRTERRRLAELRSEHGEITEKINVNIQILHSVRPTS 94
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 159 ELDQMQLRSVSPPQKPVLL--AKPSSIPVKATEKTAKTGVSSKIPIVSALKSSSQENLAE 332
++D ++ SPPQ+P P PV+ +K +T S + + + E +
Sbjct: 233 QIDTFVVKPSSPPQQPPATPPPPPPPPPVEVPQKPRRTHRSVRNRDLQE-NAKRSETKFK 291
Query: 333 SRFSLPRSPPP 365
F P SPPP
Sbjct: 292 RTFQPPPSPPP 302
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 13 PKRPPQIQRNATPTMTCPETAISSSERRRTN 105
P PPQ N +P P + ++ +R RTN
Sbjct: 103 PPAPPQTPSNQSPERPTPPSPGANDDRNRTN 133
>At4g18740.1 68417.m02769 expressed protein
Length = 245
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 192 PPQKPVLLAKPSSIPVKATE-KTAKTGVSSKIPIVSALKSSSQENLAESRFSL 347
PP++ V L +P S VK T ++ +G K+P+ ++ K+ + E + SL
Sbjct: 157 PPKRQVELPRPPSSFVKRTPLSSSASGPRGKLPVSNSDKALGKLTKKEEKASL 209
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 27.1 bits (57), Expect = 7.7
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Frame = +3
Query: 9 KTKTTASDPKKRHSDY-----DLPRNSHIKFRTATYESPKGTIVTSTDLENRRLSELDQM 173
+ KT S P K H D+ +LPRN ++ + SP D++ + Q
Sbjct: 83 RPKTVLSPPSKVHGDFSISVSNLPRN--VRMQALVKLSP-------IDVKRLAIQNFSQK 133
Query: 174 Q-LRSVSPPQKPVLLAKPSSIPVKATEK--TAKTGVSSKIPIVSALKSSSQENLAESRFS 344
+ L + L K S KA E + V S+I K S + + F+
Sbjct: 134 EALSNNGDGDDESLKVKKSETEEKAKEAILEKQDSVKSQIDDKDCSKVSVKSEMVSKSFA 193
Query: 345 LPRSPPP 365
P PPP
Sbjct: 194 PPPPPPP 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,126,970
Number of Sequences: 28952
Number of extensions: 211395
Number of successful extensions: 850
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -