Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 31 0.14
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 3.0
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 26 3.0
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 3.0
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 26 3.9
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 25 5.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.2
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 25 5.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 6.8
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 6.8
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 9.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 9.0
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 4 FFFLTEIIYLRKLFFPKPIRTLKYINLMILVFFLHHYFVI 123
FFF + L FF + ++ + Y NL + LHH ++
Sbjct: 227 FFFTLGFMALGVFFFRRSLKKVSYFNLATFITLLHHCLLV 266
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 233 KISFGVEKYNLPLMSLANPLTVKVSKCILYKTLSIVFSANI 355
+I+ E +++ L S+ P+ KV++CI +TLS+ A +
Sbjct: 717 QITIMTEHFDVDLSSV--PMQQKVAQCICVRTLSVPIGAGM 755
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +2
Query: 260 NLPLMSLANPLTVKVSKCILYKTLSIVFSANIPAELAKYISCFWPTAINLVLMSVSSGTG 439
N PL + V S C+ S +FS +P + K+ C + + L + +G
Sbjct: 67 NWPLAKKLRNVAVMGSACLCAGFGSSIFSGAVPEVMVKFHVCRTVALLGISLYVLGFASG 126
Query: 440 P 442
P
Sbjct: 127 P 127
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 321 YKIHLETFTVNGFASDINGKLYFSTPNDIFYINEDAGTL 205
+K+ E F + +S NG+ Y P I +NE G L
Sbjct: 61 FKLENEYFLLRQLSSHPNGRNYAIAPAYILLLNETLGAL 99
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 310 MYFIQDSIDSFQCKYTSGVSKIYIVFLADSNQSCFDVGEFRYRSYLTVRIDK 465
+Y + + +F + +SK V++ + Q CF V F YR + V +DK
Sbjct: 40 LYGVASTAKTFLLRTAFDLSKEENVWI--NLQDCFTVAHFWYRILIKVGVDK 89
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 361 GVSKIYIVFLADSNQSCFDVGEFRYRSY-LTVRIDKRFFV 477
G S YI F+A + Q+C V +R Y L V I +F V
Sbjct: 363 GFSSAYISFVASTLQACVKVISTTHREYHLAVFIFIQFLV 402
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 287 PLTVKVSKCILYKTLSIVFS-ANIPAELAKYISCFWPTAINLVLMSVSSGTGPT 445
PLT + CIL L++V + +++ K+++ + ++ SS PT
Sbjct: 110 PLTANICPCILKALLALVRQHRELSSDIVKFLNSIFLALTRILNTPHSSNNNPT 163
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 453 YGQVGPVPELTDIKTRLIAVGQKHDIYFANSAGIFALKTIDRVLY 319
+ G V ++ +KT + GQ H ++F SA A+K + ++
Sbjct: 28 FSTYGTVVDIVALKTPKMR-GQAHVVFFDPSAAAIAMKALKNFIF 71
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 358 SGVSKIYIVFLADSNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTM 519
SGV++I++ + S F F SYL +D I + ++ + G M
Sbjct: 1505 SGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAM 1558
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 7 FFLTEIIYLRKLFFPKPIRTLKYINLMILVFFLHHYFVI 123
F LT + +L++L + + I L LVF + ++F+I
Sbjct: 148 FVLTPLSFLKRLDSLRHTSVISLIALCYLVFIVLYHFII 186
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 489 TFNPDEKAFVYSYGQVGPVPELTDIKTRLIAV 394
TFNP+ + ++ +VGP L + + L A+
Sbjct: 4 TFNPEVRLAIHDLDKVGPAIPLENYEAALRAI 35
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 109 DEEKRLKSLN*CILKF*LVLEKTV 38
D+EK+ K LN I+K ++LEK +
Sbjct: 995 DDEKKQKFLNSVIIKASVILEKEI 1018
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,275
Number of Sequences: 5004
Number of extensions: 43764
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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