Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...    32   0.32 
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151...    29   1.7  
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517...    29   3.0  

>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 366 NSAGIFALKTIDRVLYKIHLETFTVNGFASDINGKLYFSTPNDIFYINED 217
           + A + A+K + + LY+  L T+     A D NGK+  S   D FYI ED
Sbjct: 447 DEATLRAMKNLSQYLYRSILMTYKHKMHAVDNNGKIVSSADFD-FYIKED 495


>03_05_0720 +
           27114301-27114548,27114647-27114926,27115104-27115154,
           27115679-27116000,27116610-27116718,27116754-27116802
          Length = 352

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 140 LPSAAKATPQIDS---PSCTLMTRSNVPASSFM*KISFGVEKYNLPLMSLANPL 292
           +PSA  + PQ +S   P C   TR +V  ++      F  E+ +  + S+ANPL
Sbjct: 1   MPSAVSSPPQRESILRPYCVPWTRGSVATAAVAKAAPFRGEQNHKQVASVANPL 54


>08_02_0598 -
           19149218-19149524,19150325-19150896,19151374-19151762,
           19151850-19152163,19152312-19152356,19153451-19153805,
           19154361-19154430
          Length = 683

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 354 IFALKTIDRVLYKIHLETFTVNG 286
           ++ +KTI+R+L   H   FT+NG
Sbjct: 469 VYGIKTIERILKTNHFTNFTLNG 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,426,190
Number of Sequences: 37544
Number of extensions: 235915
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)