Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056)                    31   0.76 
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)             29   3.1  
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_34464| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)               27   7.1  
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)                    27   9.4  
SB_18420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056)
          Length = 272

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 279 SDINGKLYFSTPNDIFYINEDAGTLDRVIRVQEGESIWGVAFAADGSMIYALDDKIV 109
           SD N    F+ P++++ I  D+  L  +  +    S   V+F  DGS IY+  +K+V
Sbjct: 178 SDDNSLRIFNLPSELYTIGADSSQLTEMDEITSATS---VSFNLDGSKIYSGFNKMV 231


>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
          Length = 798

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 477 DEKAFVYSYGQVGPVPELTDIKTRLIAVGQKHDIYFANSAGIFA 346
           + K F++  G    +PE  ++  R+  +G +  I   N  GIF+
Sbjct: 434 EAKRFMFRPGGASELPERLNVGDRVATLGSQDPIIVTNDVGIFS 477


>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 331 IDSFQCKYTSGVSKIYIVFLADSNQSCFDVGEFRY---RSYLTVRI-DKRFFVRIESREV 498
           + S +  Y   V+  Y++     NQSC DV  FRY    +YL   I DKR  +   S   
Sbjct: 204 VTSLRPGYLEAVTNSYMLKGVLVNQSCSDVPHFRYTAGSNYLNEMIKDKRDSLSRWSTHS 263

Query: 499 EAVD 510
           + VD
Sbjct: 264 QTVD 267


>SB_34464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 134 IMLPSAAKATPQIDSPSCTLMTRSNVPASSF 226
           ++ PS    TP + +PS  + T S+ P+SSF
Sbjct: 10  LLTPSYTIHTPSLPTPSYAIHTPSHKPSSSF 40


>SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)
          Length = 631

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 303 TFTVNGFASDINGKLYFSTPNDIFYINEDAGTLDRVI 193
           T  +N  A + NG++ FST +    + E  G+L R +
Sbjct: 581 TLFINVTAGNANGEVGFSTSHQSLVVQEPEGSLPRAV 617


>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
          Length = 1021

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -3

Query: 303 TFTVNGFASDINGKLYFSTPNDI-FYINEDAGTLDRVIRV----QEGESIWGV 160
           T  V GF    N KL+F   +DI F +    GT+ RV ++      GE+ +G+
Sbjct: 11  TGPVRGFLYITNYKLFFKADDDIPFTVEVPLGTIYRVEKIGGTTSRGENAYGL 63


>SB_18420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -3

Query: 303 TFTVNGFASDINGKLYFSTPNDI-FYINEDAGTLDRVIRV----QEGESIWGV 160
           T  V GF    N KL+F   +DI F +    GT+ RV ++      GE+ +G+
Sbjct: 60  TGPVRGFLYITNYKLFFKADDDIPFTVEVPLGTIYRVEKIGGTTSRGENAYGL 112


>SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 513 PVHGLYFTTFNPDEKAFVYSYGQVGPV 433
           PVHGL+     P    ++YS G  GP+
Sbjct: 127 PVHGLWKGAGPPQSGPYLYSSGTAGPL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,128
Number of Sequences: 59808
Number of extensions: 297338
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)