Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    29   1.5  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    29   1.5  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    29   1.5  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       29   1.5  
AL034488-6|CAA22450.2|  467|Caenorhabditis elegans Hypothetical ...    29   2.7  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   4.7  

>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   FFFLTEIIYLRKLFFP-KPIRTLKYINLMILVFFLHHYFV 120
           F FLT +I   +  +P +PI  L +  LM+ V F+  YFV
Sbjct: 250 FTFLTFLIETDRFQYPERPIFMLAFCQLMVAVGFMIRYFV 289


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   FFFLTEIIYLRKLFFP-KPIRTLKYINLMILVFFLHHYFV 120
           F FLT +I   +  +P +PI  L +  LM+ V F+  YFV
Sbjct: 250 FTFLTFLIETDRFQYPERPIFMLAFCQLMVAVGFMIRYFV 289


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   FFFLTEIIYLRKLFFP-KPIRTLKYINLMILVFFLHHYFV 120
           F FLT +I   +  +P +PI  L +  LM+ V F+  YFV
Sbjct: 250 FTFLTFLIETDRFQYPERPIFMLAFCQLMVAVGFMIRYFV 289


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   FFFLTEIIYLRKLFFP-KPIRTLKYINLMILVFFLHHYFV 120
           F FLT +I   +  +P +PI  L +  LM+ V F+  YFV
Sbjct: 250 FTFLTFLIETDRFQYPERPIFMLAFCQLMVAVGFMIRYFV 289


>AL034488-6|CAA22450.2|  467|Caenorhabditis elegans Hypothetical
           protein Y54G11A.7 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 426 LTDIKTRLIAVGQKHDIYFANSAGIFALKTIDRVLYK 316
           L D  T LIAV   HD +F N   I     I++V++K
Sbjct: 135 LDDYPTDLIAVKFSHDAHFFNGNQIGKKNAIEKVIHK 171


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
 Frame = -3

Query: 384  HDIYFANSAGIFALKTIDRV---LYKIHLETFTVNGFASDINGKLYFSTPNDIFYINEDA 214
            H +Y  NS  I A+ T+DRV   L     E+ +  GF   I+   +    + +   +ED 
Sbjct: 2057 HIVYSTNSHRIAAI-TLDRVTGYLLVSARESISPKGFIVLIDPDRHSEAIHQVIVEDEDK 2115

Query: 213  GTLDRVIRVQEGESIWGVAFAADGSMIYALDDKIVMKK 100
               +  +   +G+  W  +     S  Y  + K ++ K
Sbjct: 2116 IPYEIAVDPPKGKLFWASSSCIKSSNYYGTEAKCIVSK 2153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,833
Number of Sequences: 27780
Number of extensions: 242095
Number of successful extensions: 594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)