Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 31  LRKLFFPKPIRTLKYINLMILVFFLHHYFV 120
           LRK   P PIR  K I+++  + F   YF+
Sbjct: 447 LRKKEPPHPIRVAKTIDVIARITFPVAYFM 476


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 31  LRKLFFPKPIRTLKYINLMILVFFLHHYFV 120
           LRK   P PIR  K I+++  + F   YF+
Sbjct: 433 LRKKEPPHPIRVAKTIDVIARITFPVAYFM 462


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 31  LRKLFFPKPIRTLKYINLMILVFFLHHYFV 120
           LRK   P PIR  K I+++  + F   YF+
Sbjct: 467 LRKKEPPHPIRVAKTIDVIARITFPVAYFM 496


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 31  LRKLFFPKPIRTLKYINLMILVFFLHHYFV 120
           LRK   P PIR  K I+++  + F   YF+
Sbjct: 416 LRKKEPPHPIRVAKTIDVIARITFPVAYFM 445


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 58  IRTLKYINLMILVFFL 105
           IRTLK   ++I VFF+
Sbjct: 256 IRTLKMTVIIIAVFFI 271


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 474 EKAFVYSYGQVGPVPELTDIKT 409
           E AF Y YG   P    T+ +T
Sbjct: 216 EIAFAYRYGDAIPTVPYTETET 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,144
Number of Sequences: 438
Number of extensions: 2809
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)