Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27945.1 68418.m03364 transducin family protein / WD-40 repea...    31   0.62 
At5g25230.1 68418.m02991 elongation factor Tu family protein tra...    27   7.7  

>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
           family protein fizzy-related (FZR); contains 6 WD-40
           repeats (PF00400); WD-repeat protein,
           carrot,(gi:2253631) PIR:T14352
          Length = 428

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 342 KTIDRVLYKIHLETFTVNGFASDINGKLYFSTPNDIFYINEDAGTLDRVIRVQEGES 172
           KTID +  K H    T +GF+     + YF+ P D F  N  +  L + I  + G S
Sbjct: 30  KTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSS 86


>At5g25230.1 68418.m02991 elongation factor Tu family protein
           translation Elongation Factor 2, Schizosaccharomyces
           pombe, PIR:T39902
          Length = 973

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 351 FALKTIDRVLYKIHLETFTVNGFASDINGKLYFSTPNDIFYINEDAGTLDR 199
           F L++  R+  K+H     V+ FAS + G +Y+     +F  +   G  +R
Sbjct: 317 FTLQSFARMYAKLHGVAMDVDKFASRLWGDVYYHPDTRVFNTSPPVGGGER 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,214
Number of Sequences: 28952
Number of extensions: 209675
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)