Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    33   0.034
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   5.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   9.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.0  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 52  TSPTKLSGSTTCSSVPTCLPK*LSTTNRFAATSTPAKLSGSQQRSCRYSTASAVSTCRYL 231
           ++P     STT +S  +     +++T+  +A+STP   + S   +   STA + +T   L
Sbjct: 356 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVL 415

Query: 232 PTSAV 246
           PTS+V
Sbjct: 416 PTSSV 420



 Score = 32.7 bits (71), Expect = 0.034
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 52  TSPTKLSGSTTCSSVPTCLPK*LSTTNRFAATSTPAKLSGSQQRSCRYSTASAVSTCRYL 231
           ++P     STT +S  +     +++T+  +A+STP   + S   +   STA + +T   L
Sbjct: 470 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVL 529

Query: 232 PTSAV 246
           PTS+V
Sbjct: 530 PTSSV 534


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 294 TSPLNSPRNQPKNQRTAIGKRLKISSLKFINLN 392
           TS L   +N PKN+RT   +RL  +S  F  LN
Sbjct: 328 TSNLERNQNSPKNKRTVSYERL-ANSFSFNALN 359


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 52  TSPTKLSGSTTCSSVPTCLPK*LSTTNRFAATSTPAKLSGSQQRSCRYSTASAVSTCRYL 231
           +S    S S + SS  T     LST++  + +S+ +  S S   S   STAS+ S+   +
Sbjct: 213 SSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSI 272

Query: 232 PTSA 243
            +S+
Sbjct: 273 ISSS 276


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 384  NLNLNRTTSNLKYISRLSSFSNPS 455
            + N N  T+ L Y+S LSS+S P+
Sbjct: 1160 DFNANVDTAGLWYVSALSSYSVPA 1183


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 426 SRLSSFSNPSINIRXH 473
           S L SFS+PS+N R H
Sbjct: 335 SCLGSFSSPSVNARTH 350


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 78  NNLQLSTNLLTKVIINNQSLCSHKHSSQTIWLPTAK 185
           NNL LS  LL   ++++        +   +WL T +
Sbjct: 230 NNLDLSVRLLPSKVLSDSEFYKSLSNLVNVWLKTTR 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,543
Number of Sequences: 5004
Number of extensions: 24708
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)