Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0709 + 5346074-5346377,5347820-5347918,5348179-5348265,534...    29   2.3  
02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057...    29   3.0  
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381...    28   4.0  
07_03_0709 + 20872324-20872863                                         27   6.9  

>07_01_0709 +
           5346074-5346377,5347820-5347918,5348179-5348265,
           5349012-5349038,5349847-5350013
          Length = 227

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 446 AERRQAADILEVAGSSVEVEVDKLEAGYFQPLPDCCSLILGLVA 315
           A+R + AD L    + +    D    G   P PDCCS +  ++A
Sbjct: 14  ADRAECADKLMALSTCLTFVQDGASGGAAAPTPDCCSGLKAVLA 57


>02_03_0192 -
           16204575-16204582,16204798-16204966,16205708-16205785,
           16206442-16206567,16206723-16206968,16207368-16207487,
           16207947-16208198,16208441-16208517,16208581-16208680,
           16210071-16210511
          Length = 538

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 434 QAADILEVAGSSVEVEVDKLEAGYFQPLPDCCSLI 330
           QA D+++V  S  +++ D L +G+ QP+PD   +I
Sbjct: 319 QAIDLIDV--SYEQIDRDMLMSGFIQPIPDLSPVI 351


>04_04_0760 -
           27837170-27837328,27837441-27837504,27837812-27838160,
           27838906-27838960,27839489-27839821
          Length = 319

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +3

Query: 312 PRNQPKNQRTAIGKRLKISSLKFIN---LNLNRTTSNLK-YISRLSSFSNPSINIRXHFS 479
           P   P    TA  K+ K+  + F +    N+    +NL+    ++S  SNP I +  HFS
Sbjct: 27  PPPPPPTSSTAAPKKRKLEEVGFHHSPYYNIRAAVANLRGRFIQVSPTSNPKIFVEWHFS 86

Query: 480 -LPS*XSQNQ 506
            LP    Q Q
Sbjct: 87  ALPWQQQQQQ 96


>07_03_0709 + 20872324-20872863
          Length = 179

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 58  PTKLSGSTTCSSVPTCLPK*LSTTNRFAATSTPAKLSG 171
           PT    ++TCS+ P+     L  T R  +T TPAK  G
Sbjct: 10  PTTPITTSTCSASPSTGHASLFPTTRSRSTQTPAKTRG 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,344
Number of Sequences: 37544
Number of extensions: 179287
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)