Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               32   0.33 
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   7.1  
SB_7650| Best HMM Match : SLR1-BP (HMM E-Value=0.71)                   27   7.1  
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 82  TCSSVPTCLPK*LSTTNRFAATSTPAKLSGSQQRSCRYSTASAVSTCRYLPTSAV 246
           TC +VPT     L T +   A +T   +S     +C+     A++TC+ +PT A+
Sbjct: 160 TCETVPTKAINTLETVST-KAINTCKTVSTKAINTCKTVPTKAINTCKTVPTKAI 213



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 49  RTSPTKLSGSTTCSSVPTCLPK*LSTTNRFAATSTPAKLSGSQQRSCRYSTASAVST-CR 225
           +T PTK     TC +VPT       T    A  +    L+ +    CR     A++T C+
Sbjct: 228 KTVPTK--AINTCKTVPTKAINTCKTVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCK 285

Query: 226 YLPTSAV 246
            +PT A+
Sbjct: 286 TVPTKAI 292



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 49  RTSPTKLSGSTTCSSVPTCLPK*LSTTNRFAATSTPAKLSGSQQRSCRYSTASAVSTCRY 228
           +T PTK     TC +VPT       T     A +T   +      +C+     A++TC+ 
Sbjct: 195 KTVPTK--AINTCKTVPTKAINTCKTVPT-KAINTCKTVPTKAINTCKTVPTKAINTCKT 251

Query: 229 LPTSAV 246
           +PT A+
Sbjct: 252 VPTKAI 257


>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 76  NQIVWWGLFSDQKRRISVYILLNFN 2
           N ++WW +    +RRIS + ++N +
Sbjct: 821 NSLIWWKIHHRPRRRISDFFIINLS 845


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 219  G*YCTCC*IPTASLLGAR*FGWSACGCKA 133
            G YC C  +    L G R  GW  CG K+
Sbjct: 1177 GWYCWCSDVDGKELPGTRKRGWPDCGIKS 1205


>SB_7650| Best HMM Match : SLR1-BP (HMM E-Value=0.71)
          Length = 439

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 446 AERRQAADILEVAGSSVEVEVDKLEAGYFQPLPDCCSLILGLVARRIE 303
           +ERR  AD L   G+S +  +     GY +    CC   L +   ++E
Sbjct: 58  SERRACADCLHRCGTSKDASICNRGIGYGRTRGRCCEWSLPIALCKLE 105


>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 52  TSPTKLSGSTTCSSVPTCLPK*LSTTNRFAATSTP 156
           T  T  + +TT ++ PT +P  LSTT   A T  P
Sbjct: 125 TLTTPAAETTTVATTPTTVPTTLSTTATTATTPRP 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,041,654
Number of Sequences: 59808
Number of extensions: 184894
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)