Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E08f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   1.2  
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    24   3.6  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    23   8.2  

>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 57  PHQTIWFNNLQLSTNLLTKVIINNQSLCSHKHSSQTIWLPTAKLSVFNSKC 209
           P + IW  ++ L  N   + ++   +     ++ + IW P A   +F S C
Sbjct: 113 PSEHIWLPDIVLYNNADGEYVVTTLTKAILHYTGKVIWTPPA---IFKSSC 160


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 32  PPLLIGEQAPPN 67
           PPL  G+QAPPN
Sbjct: 211 PPLHQGQQAPPN 222


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = +3

Query: 57  PHQTIWFNNLQLSTNLLTKVIINNQSLCSHKHSSQTIWLPTAKLSVFNSKC 209
           P + IW  ++ L  N      +   +  + K++ +  W P A   ++ S C
Sbjct: 107 PSEQIWLPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPA---IYKSSC 154


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,161
Number of Sequences: 2352
Number of extensions: 6414
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)