Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/51 (21%), Positives = 21/51 (41%)
 Frame = +3

Query: 57  PHQTIWFNNLQLSTNLLTKVIINNQSLCSHKHSSQTIWLPTAKLSVFNSKC 209
           P + IW  ++ L  N      +   +  + K++    W P A   ++ S C
Sbjct: 111 PSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKPPA---IYKSSC 158


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 340 VL*FLGWLRGELSGLVYLLRL 278
           VL  +G LRG  SG+ YL  +
Sbjct: 734 VLQLVGMLRGIASGMQYLAEM 754


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 148 LWLQSDWLLIIT 113
           +WL+ DWL  +T
Sbjct: 227 IWLRPDWLFNLT 238


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  KPHQTIWFNNLQLSTNL 104
           KPH  IW N + +++ +
Sbjct: 912 KPHYDIWGNTVNVASRM 928


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,971
Number of Sequences: 438
Number of extensions: 1899
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)