Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   6.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.6  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 319 PDPITARPVPPDISASNLDIS 257
           P+P+ + P PP  S  ++ +S
Sbjct: 205 PEPVPSTPYPPPGSLGSMGVS 225


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 357 PPVLDGLARHPMC 319
           P  +DG  +HP+C
Sbjct: 144 PENVDGCQKHPLC 156


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 366 QAPPEPSPSIMAP 404
           Q PP P P I AP
Sbjct: 179 QVPPLPLPPIFAP 191


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/39 (20%), Positives = 17/39 (43%)
 Frame = +2

Query: 290 RHWTCSDRIWHMGCRASPSRTGGSNAGPTRTQPFDHGTI 406
           RH+T S + +      + +     +A  T  +PF   ++
Sbjct: 332 RHYTASSKNYRSATGGNSASNSSGDAQSTSLRPFSRWSL 370


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 255 DEMSRFEAEISGGTGRAVIGSGTWD 329
           DE S     I GG+ R V  +  WD
Sbjct: 19  DESSPLTENIYGGSTRTVQETKGWD 43


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 255 DEMSRFEAEISGGTGRAVIGSGTWD 329
           DE S     I GG+ R V  +  WD
Sbjct: 19  DESSPLTENIYGGSTRTVQETKGWD 43


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 255 DEMSRFEAEISGGTGRAVIGSGTWD 329
           DE S     I GG+ R V  +  WD
Sbjct: 19  DESSPLTENIYGGSTRTVQETKGWD 43


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 255 DEMSRFEAEISGGTGRAVIGSGTWD 329
           DE S     I GG+ R V  +  WD
Sbjct: 19  DESSPLTENIYGGSTRTVQETKGWD 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,922
Number of Sequences: 336
Number of extensions: 2373
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)