Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.0  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   5.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   5.2  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    25   6.8  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 357  APMQAPPEPSPSIMAP 404
            AP  APP P PS+ AP
Sbjct: 1116 APSGAPPVPKPSVAAP 1131



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 357  APMQAPPEPSPSIMAP 404
            AP  APP P PS+ AP
Sbjct: 1154 APSGAPPVPKPSVAAP 1169



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 360  PMQAPPEPSPSIMAP 404
            P  APP P PS+ AP
Sbjct: 1136 PSGAPPVPKPSVAAP 1150


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 299 TCSDRIWHMGCRASPSRTGGSNAGPTRTQPFDH 397
           T  D++ +  C  SPSR   SNA    T P  +
Sbjct: 488 TAEDQVHNNHCAVSPSRRSSSNALYLATLPMGY 520


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 217 SSWKNPQSFNRCKMRCPGLK 276
           +SW  PQSF+   +  PG K
Sbjct: 773 TSWMMPQSFDTSSLNAPGAK 792


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 338 SPSRTGGSNAGPTRTQPFDHGTIR 409
           +PSR+G S AG  RT     G I+
Sbjct: 150 APSRSGASTAGRRRTSATTRGAIQ 173


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 210 WRFIMEESSKFQQMQDEMSRFEAEISGGTGRAVI 311
           W  + + SSKF    DE+ ++   +   T  A+I
Sbjct: 258 WVIMNQTSSKFSDAIDEVQKYNERVKESTLTAII 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,060
Number of Sequences: 5004
Number of extensions: 39976
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)