Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 32 0.24
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194... 29 1.7
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 2.3
05_05_0251 + 23616546-23617760 29 3.0
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 28 4.0
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448... 28 5.2
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 27 6.9
10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485 27 6.9
10_01_0074 + 977173-977309,978271-978351,978444-978459 27 6.9
05_05_0044 - 21819193-21819418,21819531-21820759 27 6.9
01_01_1013 - 8015552-8015613,8016898-8018035 27 6.9
06_03_0857 + 25443251-25444429 27 9.1
06_01_0129 + 1009097-1009681 27 9.1
05_05_0317 + 24039343-24042717 27 9.1
01_03_0295 + 14750162-14750369,14751601-14752019 27 9.1
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 32.3 bits (70), Expect = 0.24
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 228 ESSKFQQMQDEMSRFEAEI-SGGTGRAVIGSGTWDA---VQARLERVAPMQAPPEP 383
+++ F Q+ SR + ++ SGGTGRA +G G A A E VAP PP P
Sbjct: 85 DANVFYWFQNRKSRSKNKLRSGGTGRAGLGLGGNRASAPAAAHREAVAPSFTPPPP 140
>07_02_0023 -
11918735-11918827,11919139-11919231,11919320-11919484,
11920234-11920327,11921012-11921136,11921228-11921313,
11921786-11921864,11923777-11923857,11924153-11924260,
11924870-11924994,11925110-11925530
Length = 489
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 228 ESSKFQQMQDEMSRFE-AEISGGTGRAVIGSGTWDAVQARLERVAPMQAPPE 380
+SSK ++ + ++ + E AE GG AV G G+ DA A L A PP+
Sbjct: 53 KSSKKKRAKGDLGQGEEAENGGGKVVAVTGKGSADAKYAPLSSFAATALPPQ 104
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 388 GLGSGGACIGATRSRRACTASHVPDPITARPVPP 287
G GSG A + A R R S D + + P+PP
Sbjct: 36 GEGSGAAVVPAKRRRERVVPSRFRDSVVSLPLPP 69
>05_05_0251 + 23616546-23617760
Length = 404
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 354 VAPMQAPPEPSPSIMAP 404
VAP Q PP P PSI+ P
Sbjct: 41 VAPQQPPPPPLPSILVP 57
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 300 RAVIGSGTWDAVQARLERVAPMQAPPEPSPSIMAPYE 410
R ++ SG + + RL P+QAPP P S +E
Sbjct: 250 RYLVESGGYLLMVVRLAPFPPLQAPPPPRTSAFKVFE 286
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 228 ESSKFQQMQDEMSRFEAEI-SGGTGRAVIGSG------TWDAVQARLERVAPMQAPPEPS 386
+++ F Q+ SR + ++ SGGTGRA +G G A A E VAP PP
Sbjct: 178 DANVFYWFQNRKSRSKNKLRSGGTGRAGLGLGGNRASEPPAAATAHREAVAPSFTPPPIL 237
Query: 387 P 389
P
Sbjct: 238 P 238
>08_01_0514 +
4481383-4481903,4482532-4484590,4485038-4485107,
4485434-4485660,4486238-4486324,4486408-4487114,
4487206-4487270,4487323-4487837,4487898-4487991,
4488116-4488398,4488494-4488689,4488913-4489254
Length = 1721
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -3
Query: 387 GWVLVGPALEPPVLDGLARHPMCQIRSLHVQCLLIFQLQTWTSHLASVETLRI 229
G + + P P L+ C ++ LH+ I ++ W S L +++ L++
Sbjct: 642 GNIHIWPGPYPLSLESCCPTTTCSLQKLHITYCFICKVPNWMSSLGNLKELKL 694
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 388 GLGSGGACIGATRSRRACTASHVPDPITARPVP-PDISASNLDI 260
G GSGG T RR ++S + P+ + P P P SA L I
Sbjct: 62 GGGSGGGSRSTTPGRRGSSSSSLVGPVPSPPSPVPFPSAEELVI 105
>10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485
Length = 346
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 366 ALEPPVLDGLARHPMCQIRSLHVQCLLIFQLQTWTSHLASVETLRIL 226
A PPVLD + H + +I S + L+ F LQ+ HL+ E ++ L
Sbjct: 62 AAPPPVLDMIGPHILTRIESRSMYGLISF-LQSRYHHLSEHEIVQCL 107
>10_01_0074 + 977173-977309,978271-978351,978444-978459
Length = 77
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 400 AMIEGLGSGGACIGATRSRR 341
A+ +G GSGG C G+ R RR
Sbjct: 9 ALGDGSGSGGRCCGSARRRR 28
>05_05_0044 - 21819193-21819418,21819531-21820759
Length = 484
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +3
Query: 285 SGGTGRA-----VIGSGTWDAVQARLERVAPMQ-APPEPSPSIMA 401
SGG G+ G WD ARL VAP Q APP + + MA
Sbjct: 278 SGGGGKVRPVAGATGDDRWDESLARLSGVAPQQPAPPAGTGAGMA 322
>01_01_1013 - 8015552-8015613,8016898-8018035
Length = 399
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 372 GPALEPPVLDGLARHPM 322
GP EPPVLDG R P+
Sbjct: 96 GPEPEPPVLDGFYRGPL 112
>06_03_0857 + 25443251-25444429
Length = 392
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 388 GLGSGGACIGATRSRRACTASHVPDPITARPVPPDISAS 272
G G G G +R RRA A+ P + P PP S++
Sbjct: 200 GRGGGARGRGRSRRRRAAAAAAPSAPASEAPPPPPPSSA 238
>06_01_0129 + 1009097-1009681
Length = 194
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 311 RIWHMGCRASPSRTGGSNA 367
RIW GCR +R GGS A
Sbjct: 25 RIWPPGCRIGRARGGGSRA 43
>05_05_0317 + 24039343-24042717
Length = 1124
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 360 EPPVLDGLARHPMCQIRSLHVQCLLIFQLQTWTSHLASVETLRI 229
E +L+ L H C++R L V+ + F W S L ++T+ +
Sbjct: 742 EKEILEQLQPH--CELRELTVKGFVGFYFPKWLSRLCHLQTIHL 783
>01_03_0295 + 14750162-14750369,14751601-14752019
Length = 208
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 398 HDRRAGFWWGLHWS 357
H R+ +WWG HWS
Sbjct: 143 HLRQKWWWWGQHWS 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,896
Number of Sequences: 37544
Number of extensions: 311571
Number of successful extensions: 1235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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