Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                37   0.009
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   30   1.0  
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)               28   4.1  
SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 28   5.4  
SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_32605| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_45211| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +3

Query: 225 EESSKFQQMQDEMSRFEAEISG-GTGRAVIGSGTWD-AVQARLERVAPMQAPPEPSPSIM 398
           E+S +  ++++EMSRFE EI+G    R +I + T+  A QA  E V     PP+ +   +
Sbjct: 8   EDSERKNELEEEMSRFEQEIAGHPVPRPIISANTFKMASQAIQEAVVHNVPPPQITARPV 67

Query: 399 AP 404
           AP
Sbjct: 68  AP 69


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 343 RACTASHVPDPITARPVPPDISASNLDISSCIC*NFEDSSM--MKRQP-*P*RIPKDLRT 173
           R  T     +P+ A   P D +   L +S C+C  F+ SSM  + R+P  P + PKDL+ 
Sbjct: 79  RKRTTGDAINPL-AVTTPSDSTHQFLRVSGCVCRVFQLSSMPLLNRKPFTPEKPPKDLKP 137

Query: 172 N 170
           N
Sbjct: 138 N 138


>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
          Length = 1066

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 393 SKGWVLVGPALEPPVLDGLARHPMCQIRSLHVQCLLIFQLQTWTSH 256
           S G +++G  L    LD   +HP+   +  HV  L++ ++   +SH
Sbjct: 768 SPGLLIIGGRLRQASLDDTVKHPIILPKDGHVTWLIVKEVHGKSSH 813


>SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 729

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 331 ASHVPDPITARPVPPDISASNLDISS 254
           +SH P P   RPV PD+S S  D+ S
Sbjct: 390 SSHKPGPPGDRPVHPDVSRSLGDVRS 415


>SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 110 DARMCMYFNKRHIVVPKLSNISA*IFWNSLR 202
           D+RM M   +RH +VP L  +    FW   R
Sbjct: 6   DSRMAMRVKQRHGMVPPLDQLEYDDFWKEFR 36


>SB_32605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 356 GSNAGPTRTQPFDHGTIRAYTCVPC 430
           G  A P+R +   H  + AYTC  C
Sbjct: 106 GGKAAPSRREALMHTVLTAYTCAIC 130


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +1

Query: 358 LQCRPHQNPALRSWHHTSLHLCTLQYLXXXXXXPYWCQPKCK 483
           + C    NP + +W   S     L++L        +C P C+
Sbjct: 249 MSCASAMNPLIYAWRSESFRDAVLKFLGCKKSTVTYCGPPCR 290


>SB_45211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 243 QQMQDEMSRFEAEISGGTGRAVI------GSGTWDAVQARLERVAPMQAPPEPSPSIMAP 404
           Q++ +E +RF AEI    GRAV+      G+  W    AR   V   Q   +    ++ P
Sbjct: 22  QELDEESNRFLAEIKFNLGRAVVLREASPGALYWSNRLARYFSVESTQEILDEWRPLLCP 81

Query: 405 YE 410
           Y+
Sbjct: 82  YD 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,213
Number of Sequences: 59808
Number of extensions: 334148
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)