Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 31 0.50
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 31 0.50
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 31 0.50
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 31 0.50
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 31 0.50
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 29 2.0
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 29 2.0
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 29 2.0
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 29 2.0
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 29 2.0
AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical ... 27 6.2
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 27 8.1
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical... 27 8.1
AC006603-6|ABB51200.1| 534|Caenorhabditis elegans Hypothetical ... 27 8.1
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 31.1 bits (67), Expect = 0.50
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1149 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1182
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 31.1 bits (67), Expect = 0.50
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1183 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1216
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 31.1 bits (67), Expect = 0.50
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1241 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1274
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 31.1 bits (67), Expect = 0.50
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1294 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1327
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 31.1 bits (67), Expect = 0.50
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1213 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1246
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 255 DEMSRFEAEISGGTGRAVIGSGTWDAVQA 341
+E RFE E+S R V+G GT+ V A
Sbjct: 652 NEKIRFEYELSNSNERVVLGKGTYGTVYA 680
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 394 IEGLGSGGACIGATRSRRACTASHVPDPI 308
IE + + G+ T +RR+CT+ H PD +
Sbjct: 375 IESVNAKGSTNSTTYNRRSCTSLHAPDKL 403
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+P S
Sbjct: 1205 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPPES 1238
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+P S
Sbjct: 1183 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPPES 1216
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 291 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 392
GT + W ++ARL+ P+ PP+P S
Sbjct: 1205 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPPES 1238
>AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical
protein Y104H12D.3 protein.
Length = 606
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 290 RHWTCSDRIWHMGCRASPSRTGGSNAGPTRT 382
RH ++ W GC A+P+ +GG + G T
Sbjct: 368 RHQFFTNSEWPGGCYATPTMSGGRDGGAVAT 398
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 312 GSGTWDAVQARLERVAPMQAPPEPSPSIMAPY 407
G+ W + ERV + A P SPS M P+
Sbjct: 225 GTSRWPSQNTVYERVGSVAATPRHSPSPMLPH 256
>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
protein Y105E8A.26a protein.
Length = 1172
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 312 GSGTWDAVQARLERVAPMQAPPEPSPSIMAPY 407
G+ W + ERV + A P SPS M P+
Sbjct: 225 GTSRWPSQNTVYERVGSVAATPRHSPSPMLPH 256
>AC006603-6|ABB51200.1| 534|Caenorhabditis elegans Hypothetical
protein B0524.1 protein.
Length = 534
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 349 SRRACTASHVPDPITARPVPPDISASNLDISSCIC*NFE 233
S + AS PD + + P D S NL IC +FE
Sbjct: 469 SESSSEASEPPDDVITKEEPTDFSEENLVKKEEICDDFE 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,786,251
Number of Sequences: 27780
Number of extensions: 243412
Number of successful extensions: 695
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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