Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    22   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.8  

>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 416 CRLVWCHDRRAGFWWGLH 363
           CR+  C D+ +GF +G+H
Sbjct: 9   CRV--CGDKASGFHYGVH 24


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 416 CRLVWCHDRRAGFWWGLH 363
           CR+  C D+ +GF +G+H
Sbjct: 67  CRV--CGDKASGFHYGVH 82


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 154 NHYMSLVKIHTHSRIMNDVRVSL*KLTL 71
           NHY S   + TH R    V VS+  L+L
Sbjct: 121 NHYTSHQHLRTHLRGTLTVNVSVLLLSL 148


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 360 PMQAPPEPSPSIMAP 404
           P  APP P PS   P
Sbjct: 339 PKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,815
Number of Sequences: 438
Number of extensions: 2784
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)