Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family...    32   0.20 
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At5g61090.1 68418.m07665 proline-rich family protein contains pr...    27   7.7  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    27   7.7  

>At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 175

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 273 EAEISGGTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPSIMAP 404
           E   + G   +++G+  + + + RL+R +P   PP PSP    P
Sbjct: 32  ECNCNSGACNSLVGATYYPSCKPRLQRYSPYGNPPPPSPQYSPP 75


>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 611

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 222 MEESSKFQQMQDEMSRFEAEISGGTGRAV--IGSGTWDAVQ 338
           MEE ++FQ ++ E  +F   ISG  G  V  +    W+ ++
Sbjct: 76  MEEEARFQTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIE 116


>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 358 ATRSRRACTASHVPDPITARPVP 290
           A RS  AC    +P P+ ARP P
Sbjct: 103 APRSVPACPIPEIPRPVPARPTP 125


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 175 CVNLLEFFKVKVGASSWKNPQSFNRCKMRCPGLKLKYQEALDVQ*SDLAHGMPC 336
           C N+L+  K     +S  +PQ+ + CK R  G  LK    +D++  D + G  C
Sbjct: 234 CNNILKGKKKTFVIASNCHPQTIDVCKTRADGFDLKV-VTVDIKDVDYSSGDVC 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,180,057
Number of Sequences: 28952
Number of extensions: 225915
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)