Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 29 0.42
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 27 1.7
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 27 1.7
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 26 3.0
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 3.0
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 26 3.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 3.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 5.2
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 5.2
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 5.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 6.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.0
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.0
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 29.1 bits (62), Expect = 0.42
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 257 DLNYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTLRE 379
D N++++W +++D SDD Q E N N SL+L E
Sbjct: 702 DANFDEEWSKAADLMSDDPENQVLYE----GNLNSSLSLNE 738
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 204 RCYSKRSSATATSHPLCAILTTKINGVNPPTVLQTTTLRSRL 329
+C+ K+ +ATA +H K+NG P +++Q LR ++
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGA-PLSLVQPEILRMKV 45
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 204 RCYSKRSSATATSHPLCAILTTKINGVNPPTVLQTTTLRSRL 329
+C+ K+ +ATA +H K+NG P +++Q LR ++
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGA-PLSLVQPEILRMKV 45
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 269 EDKWRESSDCASDDNSAQSAAELKDSANGNESLTLREFLS 388
+ + ES DC+S + + +L + + +E L + FLS
Sbjct: 374 DQDYAESHDCSSTTSQVDTLGKLAPTKSASEMLLMDSFLS 413
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 114 LRDRSRCSRLFLSSARSNSSGVFFKA 37
+RD+ RC RL L + S G F A
Sbjct: 332 IRDKERCKRLILEQIHTLSPGTFADA 357
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 212 LEEEFSDGDEPPTLCDLNYEDKW 280
+EE F++ +E P C +YED W
Sbjct: 394 VEEGFTNVEEVPFKCLKDYEDTW 416
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +2
Query: 284 ESSDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
E +D A D A E+K ++ LRE + N + D
Sbjct: 1143 EKTDLADGDEKANIKTEMKSETVEGDNKELRETMKGENVQTD 1184
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 272 DKWRESSDCASDDNSAQSAAELKDSANGNES 364
D ESS SD +S+ S++E + S+ N+S
Sbjct: 152 DSESESSSEGSDSSSSSSSSESESSSEDNDS 182
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 272 DKWRESSDCASDDNSAQSAAELKDSANGNES 364
D ESS SD +S+ S++E + S+ N+S
Sbjct: 206 DSESESSSEGSDSSSSSSSSESESSSEDNDS 236
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 287 SSDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDYPTVHSLMFH 439
+S C SD S Q + + N+S+ SP + PT+HS H
Sbjct: 512 ASTCLSDLISPQLSILSHEDKRENQSVNSESSKYSPRSSNHSPTLHSKDLH 562
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 207 CYSKRSSATATSHPLCAILTTKINGVNPPTVLQTTTLRS 323
CYS ++SA +T K NG N T L T S
Sbjct: 708 CYSAKASAAVERKYHFQNMTPKPNGTNSVTTLNRTQTHS 746
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 215 EEEFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGNE 361
E S E + E+K SSD +S+ +S++S +E S + E
Sbjct: 139 ESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEE 187
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 281 RESSDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDYPTVHSL 430
+ SS D++ Q A+ L A S L++F SSP HSL
Sbjct: 153 KTSSPIVIPDDNEQVASPLSKKAASLTSSPLKDFQSSPPLSTVLQKSHSL 202
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 390 EERNSRRVSDSLPFAESFSSAADCAEL 310
+ R R VSDSLP A S + D +L
Sbjct: 8 QSRGKRVVSDSLPIANSTHTLEDTLKL 34
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 397 CGAGLSYSAQSHVPLVANVTSEC--HYDLTTGTVSVLF 504
CG+ + ++A+ + +T EC H TG+V + F
Sbjct: 1935 CGSVICFNARQNTVSSRRLTGECNKHAATCTGSVGIFF 1972
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,292
Number of Sequences: 5004
Number of extensions: 29044
Number of successful extensions: 122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -