Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0452 - 3566352-3567602,3568840-3569389,3570169-3570203           29   3.0  
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956     28   4.0  
04_01_0304 + 4136261-4136294,4136360-4136436,4136555-4136634,413...    28   5.2  
08_02_0991 - 23377621-23378364                                         27   6.9  
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648...    27   6.9  
09_02_0539 - 10408398-10409552                                         27   9.1  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   9.1  

>12_01_0452 - 3566352-3567602,3568840-3569389,3570169-3570203
          Length = 611

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 356 CHSPSPLVLQPTAQSCRLKHSR 291
           CH P PLV QP+  S R   SR
Sbjct: 52  CHQPKPLVCQPSFSSGRFMWSR 73


>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
          Length = 397

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 393 GEERNSRRVSDSLPFAESFSSAADCAELSSEAQSE 289
           G+E+NS++V +  P AE    AA  A+  S+ + +
Sbjct: 15  GKEKNSKQVEEVAPAAEKKEEAAAAADAGSKEEEQ 49


>04_01_0304 +
           4136261-4136294,4136360-4136436,4136555-4136634,
           4137244-4137310,4137975-4138166,4138763-4139059
          Length = 248

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
 Frame = -1

Query: 257 RTKWVARRRR*TPLRVAA--CETSI-----AKNLRHC 168
           R++W  R RR TPL VAA  C  +I     A  LRHC
Sbjct: 199 RSRWTPRTRRGTPLGVAAAICLCTIRTAPRAAALRHC 235


>08_02_0991 - 23377621-23378364
          Length = 247

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 195 SLARCYSKRSSATATSHPLCAILTTKINGVNPPTVLQTTTLRS 323
           ++A C +  ++A  +S P  A   T   GVN   V+  T+ R+
Sbjct: 204 AIAHCKNSIAAAAPSSRPAAAAAATTPTGVNADAVVACTSSRA 246


>02_02_0497 +
           10961079-10963824,10964182-10964282,10964759-10964800,
           10966918-10966986
          Length = 985

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 311 NSAQSAAELKDSANGNESLTLREFLSSPNAELDYPTVHSLMFHWLQT*HLNVTTISLQVL 490
           N+    AE+  +    + LT    +S   A+ D       +FH LQ+  LN  TIS+  +
Sbjct: 585 NNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNI 644

Query: 491 FRYCLINSS 517
              C+  SS
Sbjct: 645 LSACIHLSS 653


>09_02_0539 - 10408398-10409552
          Length = 384

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +2

Query: 215 EEEFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTLREFLSSP 394
           E+EF++  +     +   +D+   SS+   DD +     E+ D+     S++ ++ L+  
Sbjct: 53  EDEFTEASDDEESMEETDDDETDASSNDNDDDTANDEGKEVNDTLL-LYSISSKQLLA-- 109

Query: 395 NAELDYPTVHSLMFHWL 445
           N++LDY   H   F+W+
Sbjct: 110 NSKLDYLKDH---FYWI 123


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 359 RCHSPSPLVLQPTAQSCRLKHSRRI 285
           R H P PL L PT    R +H RR+
Sbjct: 8   RLHLPPPLQLPPTLPLPRGRHDRRV 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,841,341
Number of Sequences: 37544
Number of extensions: 209730
Number of successful extensions: 689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)