Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40917| Best HMM Match : Filament (HMM E-Value=1.7) 31 0.58
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) 29 3.1
SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 28 5.4
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0) 27 7.1
SB_25077| Best HMM Match : BTB (HMM E-Value=1.4e-10) 27 9.4
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 27 9.4
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85) 27 9.4
>SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)
Length = 421
Score = 31.1 bits (67), Expect = 0.58
Identities = 25/67 (37%), Positives = 33/67 (49%)
Frame = +2
Query: 209 LLEEEFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTLREFLS 388
L E E SDG E P+L D N ED D AQ + +AN + SL+ RE +S
Sbjct: 327 LTEGEASDGKEDPSLSDQNIED---SDDDDIIITKIAQEIRDYHSAANRSRSLS-RE-VS 381
Query: 389 SPNAELD 409
S + + D
Sbjct: 382 SESGDSD 388
>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
Length = 1001
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 272 DKWRESSDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDY 412
D+W E + S D +L+++A G+E LRE + + A ++Y
Sbjct: 940 DRWVEDREKLSKDMET-CRTKLQEAATGDEQTQLREQMEALTAHMEY 985
>SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +2
Query: 263 NYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDYPT 418
N KWR+ DD+ E KD N++ TL++ ++D P+
Sbjct: 22 NRRAKWRKREKSKGDDDGNVDENEPKDEETANQTPTLKDNDEKSYYKVDIPS 73
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 405 SSAFGEERNSRRVSDSLPFAESFSSAADCAELSSE 301
S A G+E S + S+SL +ES+ S AD E++ E
Sbjct: 80 SGASGDESKSVKSSESLSLSESYQS-ADSGEVADE 113
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -3
Query: 492 NSTCSEIVVTFRCYVCNQWNMRLCTVG*SSSAFGEERNSRRVSDSLPFAESF 337
N+TCS F C W +LC+V +N+ +DS +E F
Sbjct: 1864 NATCSGNATGFYCTCAEGWEGKLCSVDIKECESTPCQNNGTCTDSHSVSEFF 1915
>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 486 TCSEIVVTFRCYVCNQWNMRLCTVG 412
TCSE + T+RC + W C VG
Sbjct: 59 TCSESLGTYRCNCMSGWQGLSCEVG 83
>SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)
Length = 583
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 236 DEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELK 340
D +LC+LN DK+ + D + NSA + +K
Sbjct: 513 DNQTSLCELNKYDKYHDPDDFINRTNSAHRHSVIK 547
>SB_25077| Best HMM Match : BTB (HMM E-Value=1.4e-10)
Length = 292
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +2
Query: 245 PTLCDLNYEDKWRESSDCASDDNS----AQSAAELKDSANGNESLTLREFLSSPNAELDY 412
P C+L++ +W+ S + DN+ +A + S E LT PN EL
Sbjct: 44 PQTCNLDFSKQWKRSDAVLTVDNNQKFHVHTATLARVSPVFEELLTPENLAKYPNKELYL 103
Query: 413 P 415
P
Sbjct: 104 P 104
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 27.1 bits (57), Expect = 9.4
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 203 TLLLEEEFSDGDEPPTLCDLNYEDKWRESSDCASDDNSA---QSAAELKDSANGNESLTL 373
T LLEE GD +L DL +D SS +NS Q EL S+ ++L+L
Sbjct: 113 TELLEEVSCFGDSQTSLSDLRRKDS--PSSPSLQSNNSETDNQQGNELSYSSGYQDALSL 170
Query: 374 REFLSSPNAE 403
+ N E
Sbjct: 171 SHIKADKNLE 180
>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
Length = 203
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 212 VAACETSIAKNLRHCCPDCRSRFVVA 135
+ C T I + HCC C SR +V+
Sbjct: 33 IVTCITRINMSHSHCCVTCHSRNIVS 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,535
Number of Sequences: 59808
Number of extensions: 239407
Number of successful extensions: 799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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