Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E06f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D26488-1|BAA05499.1|  686|Homo sapiens KIAA0007 protein.               33   0.80 
BC024234-1|AAH24234.1|  134|Homo sapiens WDR43 protein protein.        33   0.80 
M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif co...    29   9.9  

>D26488-1|BAA05499.1|  686|Homo sapiens KIAA0007 protein.
          Length = 686

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +2

Query: 206 LLLEEEFSDGDEPPTLCDLNYEDKW---RESSDCASDDN--SAQSAAELKDSANGNESLT 370
           L+ EEE S+ +    + D + ED W    E S+   D++       AE KD  NG +  T
Sbjct: 606 LVYEEESSEEESDDEIADKDSEDNWDEDEEESESEKDEDVEEEDEDAEGKDEENGEDRDT 665

Query: 371 LREFLSSPNAELD 409
             E   + +++LD
Sbjct: 666 ASEKELNGDSDLD 678


>BC024234-1|AAH24234.1|  134|Homo sapiens WDR43 protein protein.
          Length = 134

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +2

Query: 206 LLLEEEFSDGDEPPTLCDLNYEDKW---RESSDCASDDN--SAQSAAELKDSANGNESLT 370
           L+ EEE S+ +    + D + ED W    E S+   D++       AE KD  NG +  T
Sbjct: 54  LVYEEESSEEESDDEIADKDSEDNWDEDEEESESEKDEDVEEEDEDAEGKDEENGEDRDT 113

Query: 371 LREFLSSPNAELD 409
             E   + +++LD
Sbjct: 114 ASEKELNGDSDLD 126


>M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif
           containing protein protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 284 ESSDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDYPTVH-SLMFHWLQT*HL 460
           + + C SD +    A    ++ANGN    L  FL S    +   ++  SL+  + ++ ++
Sbjct: 375 QENGCLSDSDMFSQAGLRSEAANGNLDFVL-SFLKSNTLPISLQSIRSSLLLGFRRSMNI 433

Query: 461 NVTTISLQVLF---RYC 502
           NV +   ++L+   RYC
Sbjct: 434 NVWSEITELLYKDGRYC 450


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,525,476
Number of Sequences: 237096
Number of extensions: 1066612
Number of successful extensions: 3303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3301
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)