Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E06f
(521 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT030151-1|ABN49290.1| 525|Drosophila melanogaster IP17639p pro... 31 1.3
AY051995-1|AAK93419.1| 524|Drosophila melanogaster LD46238p pro... 31 1.3
AE014134-1244|AAF52489.1| 524|Drosophila melanogaster CG4495-PA... 31 1.3
AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein. 29 3.8
AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein. 29 3.8
AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein. 29 3.8
AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF... 29 3.8
AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD... 29 3.8
AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC... 29 3.8
AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB... 29 3.8
AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA... 29 3.8
AE014134-770|AAF50983.2| 450|Drosophila melanogaster CG15630-PA... 29 5.1
AE013599-3185|AAG22188.1| 1542|Drosophila melanogaster CG9485-PA... 29 5.1
AE013599-3184|AAF46713.3| 1546|Drosophila melanogaster CG9485-PC... 29 5.1
AE013599-3183|AAM70868.2| 1629|Drosophila melanogaster CG9485-PB... 29 5.1
AE013599-2588|AAM68478.1| 614|Drosophila melanogaster CG30110-P... 29 5.1
>BT030151-1|ABN49290.1| 525|Drosophila melanogaster IP17639p
protein.
Length = 525
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 233 GDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTLRE 379
G P + D+N EDK ES S+D A S L + E + RE
Sbjct: 112 GQRPSSAADVNGEDKSSESESEDSEDEEAGSDLHLHEGKKIREKVGFRE 160
>AY051995-1|AAK93419.1| 524|Drosophila melanogaster LD46238p
protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 233 GDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTLRE 379
G P + D+N EDK ES S+D A S L + E + RE
Sbjct: 112 GQRPSSAADVNGEDKSSESESEDSEDEEAGSDLHLHEGKKIREKVGFRE 160
>AE014134-1244|AAF52489.1| 524|Drosophila melanogaster CG4495-PA
protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 233 GDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTLRE 379
G P + D+N EDK ES S+D A S L + E + RE
Sbjct: 112 GQRPSSAADVNGEDKSSESESEDSEDEEAGSDLHLHEGKKIREKVGFRE 160
>AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 204 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 237
>AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.
Length = 1023
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 200 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 233
>AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.
Length = 1015
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 200 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 233
>AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF,
isoform F protein.
Length = 961
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 138 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 171
>AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD,
isoform D protein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 204 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 237
>AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC,
isoform C protein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 204 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 237
>AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB,
isoform B protein.
Length = 1023
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 200 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 233
>AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA,
isoform A protein.
Length = 1023
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 308 DNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
+ S S++E+ + +NG ++ R F +PNAE+D
Sbjct: 200 NTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVD 233
>AE014134-770|AAF50983.2| 450|Drosophila melanogaster CG15630-PA
protein.
Length = 450
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -1
Query: 410 SPAPHSVKKGTHAE*ATRCHSPSPLV----LQPTAQSCRLKHSRRIH 282
SPA HSV + T+ +C SP P V P + R +H RIH
Sbjct: 28 SPAEHSVVRYTNESLIVQCRSPDPKVELHWKSPKGEIIR-EHKGRIH 73
>AE013599-3185|AAG22188.1| 1542|Drosophila melanogaster CG9485-PA,
isoform A protein.
Length = 1542
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 388 FTECGAGLSYSAQSHVPLVANVTSECHYD 474
F +CGA ++ + HV + A + ECH +
Sbjct: 278 FAQCGADIAEGSLEHVGVPAVIEQECHLE 306
>AE013599-3184|AAF46713.3| 1546|Drosophila melanogaster CG9485-PC,
isoform C protein.
Length = 1546
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 388 FTECGAGLSYSAQSHVPLVANVTSECHYD 474
F +CGA ++ + HV + A + ECH +
Sbjct: 282 FAQCGADIAEGSLEHVGVPAVIEQECHLE 310
>AE013599-3183|AAM70868.2| 1629|Drosophila melanogaster CG9485-PB,
isoform B protein.
Length = 1629
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 388 FTECGAGLSYSAQSHVPLVANVTSECHYD 474
F +CGA ++ + HV + A + ECH +
Sbjct: 365 FAQCGADIAEGSLEHVGVPAVIEQECHLE 393
>AE013599-2588|AAM68478.1| 614|Drosophila melanogaster CG30110-PA
protein.
Length = 614
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 245 VARRRR*TPLRVAACETSIAKNLRHCCPDCRSR 147
V RR+R P++ A+C+T + +N C R +
Sbjct: 481 VCRRKRKAPVKAASCQTEVNRNRCELCEFSRPK 513
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,718,191
Number of Sequences: 53049
Number of extensions: 353152
Number of successful extensions: 1562
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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