Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    31   0.66 
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    31   0.66 
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    31   0.66 
Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain pro...    27   6.2  
AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.     27   6.2  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   8.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   8.1  

>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
            T06D8.1b protein.
          Length = 3653

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +2

Query: 221  EFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKD---SANGNESLTLREFLSS 391
            E SDG    T+   + E    ESS   +D+ S  +AAE KD   S     +    +   S
Sbjct: 3198 ESSDGSGESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESSTTEAPAFVTSKTSGS 3257

Query: 392  PNAELDYPTVHSLM 433
               E D P  H  +
Sbjct: 3258 EEDEEDSPDTHEFL 3271


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +2

Query: 221  EFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKD---SANGNESLTLREFLSS 391
            E SDG    T+   + E    ESS   +D+ S  +AAE KD   S     +    +   S
Sbjct: 3198 ESSDGSGESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESSTTEAPAFVTSKTSGS 3257

Query: 392  PNAELDYPTVHSLM 433
               E D P  H  +
Sbjct: 3258 EEDEEDSPDTHEFL 3271


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +2

Query: 221  EFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKD---SANGNESLTLREFLSS 391
            E SDG    T+   + E    ESS   +D+ S  +AAE KD   S     +    +   S
Sbjct: 3198 ESSDGSGESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESSTTEAPAFVTSKTSGS 3257

Query: 392  PNAELDYPTVHSLM 433
               E D P  H  +
Sbjct: 3258 EEDEEDSPDTHEFL 3271


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +2

Query: 221  EFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKD---SANGNESLTLREFLSS 391
            E SDG    T+   + E    ESS   +D+ S  +AAE KD   S     +    +   S
Sbjct: 3198 ESSDGSGESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESSTTEAPAFVTSKTSGS 3257

Query: 392  PNAELDYPTVHSLM 433
               E D P  H  +
Sbjct: 3258 EEDEEDSPDTHEFL 3271


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +2

Query: 221  EFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKD---SANGNESLTLREFLSS 391
            E SDG    T+   + E    ESS   +D+ S  +AAE KD   S     +    +   S
Sbjct: 3198 ESSDGSGESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESSTTEAPAFVTSKTSGS 3257

Query: 392  PNAELDYPTVHSLM 433
               E D P  H  +
Sbjct: 3258 EEDEEDSPDTHEFL 3271


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
            protein T06D8.1a protein.
          Length = 3719

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +2

Query: 221  EFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKD---SANGNESLTLREFLSS 391
            E SDG    T+   + E    ESS   +D+ S  +AAE KD   S     +    +   S
Sbjct: 3198 ESSDGSGESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESSTTEAPAFVTSKTSGS 3257

Query: 392  PNAELDYPTVHSLM 433
               E D P  H  +
Sbjct: 3258 EEDEEDSPDTHEFL 3271


>Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical
           protein W05B10.2 protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 218 EEFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGNESLTL-REFLSS 391
           E+ ++ DE PT+    +     ++    SDD+  +S    K   +G     L +EF SS
Sbjct: 42  EKIAESDEKPTISSFFFSGDDDKAGSSDSDDSEGESVGPKKKRRSGESVTELDKEFTSS 100


>AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical
           protein Y106G6E.5 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 215 RVAACETSIAKNLRHCCPDCRSRFVVARSL 126
           R+A C  S+  ++   CPD   RF + +SL
Sbjct: 262 RIALCALSLMNSMIRRCPDDEKRFELIKSL 291


>AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain
           protein CED-12 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 215 RVAACETSIAKNLRHCCPDCRSRFVVARSL 126
           R+A C  S+  ++   CPD   RF + +SL
Sbjct: 262 RIALCALSLMNSMIRRCPDDEKRFELIKSL 291


>AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 215 RVAACETSIAKNLRHCCPDCRSRFVVARSL 126
           R+A C  S+  ++   CPD   RF + +SL
Sbjct: 262 RIALCALSLMNSMIRRCPDDEKRFELIKSL 291


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 296  CASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDYPTVHSLMFHWL 445
            C  +D+    + E      GN + T +EF  + NA+L  P    +   WL
Sbjct: 3026 CDGEDDCGDGSDEHSRHGCGNRTCTDQEFHCTSNAKLAQPKYECIPRAWL 3075


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 296  CASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDYPTVHSLMFHWL 445
            C  +D+    + E      GN + T +EF  + NA+L  P    +   WL
Sbjct: 3026 CDGEDDCGDGSDEHSRHGCGNRTCTDQEFHCTSNAKLAQPKYECIPRAWL 3075


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,731
Number of Sequences: 27780
Number of extensions: 173184
Number of successful extensions: 670
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)