Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 245 PTLCDLNYEDKWRESSD 295
           PT+ D N  DKW ++ D
Sbjct: 270 PTVLDRNVIDKWIKTED 286


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 269 EDKWRESSDCASDDNSAQSAAELK 340
           EDK        +D  SAQ+ AELK
Sbjct: 363 EDKGMYQCFVRNDQESAQATAELK 386


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 369 LCVSSFLHRMRSWTI 413
           L +SSF+ RM  W I
Sbjct: 113 LVISSFMERMIGWEI 127


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 369 LCVSSFLHRMRSWTI 413
           L +SSF+ RM  W I
Sbjct: 113 LVISSFMERMIGWEI 127


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 418 SAQSHVPLVANVTSECHYDLTT 483
           S+ +   L+  +T++C YD  T
Sbjct: 6   SSMTQTELLQELTNDCRYDKMT 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,475
Number of Sequences: 438
Number of extensions: 2005
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)