Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04865.1 68415.m00502 expressed protein ; expression supporte...    31   0.62 
At5g41950.1 68418.m05108 expressed protein                             30   0.82 
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot...    27   5.8  
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    27   5.8  
At3g54100.1 68416.m05981 expressed protein similar to axi 1 [Nic...    27   7.7  

>At2g04865.1 68415.m00502 expressed protein ; expression supported
           by MPSS
          Length = 667

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 212 LEEEFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAAELKDSANGN 358
           L+EEF DG+EP    D+  EDK  ES     DD++A+  +++    N N
Sbjct: 595 LQEEF-DGEEPTESYDVKKEDK--ESK--VEDDDAAKGFSDVSGEENAN 638


>At5g41950.1 68418.m05108 expressed protein
          Length = 565

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 236 DEPPTLCDLNYEDKWRESSDCASDDNSAQSAAE-LKDSANGNESLTLREFLSSPNAELDY 412
           D  P L D++      E     S +   +S    LK   +GN++ T+RE LS   +E   
Sbjct: 101 DTKPDLTDVDLSPGGSEEIPIRSTEVEQESTTSVLKKDDDGNKTFTMRELLSELKSEEGD 160

Query: 413 PTVHS 427
            T HS
Sbjct: 161 GTPHS 165


>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 494

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +2

Query: 290 SDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELDYPTVHSLMFHWLQT 451
           +DC   + S   A+EL   +NG+++ + +E   S  ++LD P+   L+ + L+T
Sbjct: 273 TDCQLKNISGAQASELDPQSNGSDT-SKKERNGSLKSQLDKPSNSDLLGNELKT 325


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 287 SSDCASDDNSAQSAAELKDSANGNESLTLREFLSSPNAELD 409
           S+  A +DNS       + +AN N S +L     SP+A LD
Sbjct: 12  STTTAVEDNSTTMPPSSRSAANQNSSSSLHLCKHSPSATLD 52


>At3g54100.1 68416.m05981 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 638

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 212 LEEEFSDGDEPPTLCDLNYEDKWRESSDCASDDNSAQSAA 331
           LEE F    +P  +C+ ++ ++ R+ S   +D  S + +A
Sbjct: 597 LEENFYANPQPDCICNKSHPEQLRKQSSLRTDSKSWKKSA 636


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,408,971
Number of Sequences: 28952
Number of extensions: 161037
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)