Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 31 0.14
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro... 29 0.42
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 29 0.42
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.56
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 0.73
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.2
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 3.0
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 25 5.2
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 6.8
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 9.0
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 9.0
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.14
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Frame = +1
Query: 85 YPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEV 264
Y ++ Y+ EA + +DK K K + +N+N ++GFF P
Sbjct: 150 YAKKQENAYL---EAVMQMDKSKSRFKGAETEYNRALDNKNTGDSQKKVGFFKP------ 200
Query: 265 VIKSNA-VFKVPEPNRYILESSVSLCHSSL-GADRVSKLLLDVSPTKFV 405
KSNA + K+ + R E++ S HS + A V K LL + ++
Sbjct: 201 --KSNAQLTKLEDEARLKAENAESDMHSKIENAQNVQKQLLCIHRPNYI 247
>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 160 HKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 288
H R + NI N + +++I + ++H + E +IK+ A F
Sbjct: 120 HVPDERLVSNIKNTQTKDSITRDSAYYHRKTMTESIIKTLAAF 162
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 29.1 bits (62), Expect = 0.42
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -1
Query: 266 TTSLSSLGWKNPISAAIAS*FLLLEMLMRYLTEVLCPCFFLSRSRQASPLNIYGESL 96
T S S G++ IS + S LL L T C C F S + +SP + Y ESL
Sbjct: 406 TRSTSGKGFETKISINLDSDIKLLNTLSPLETFFWC-CSFPSTASTSSPFSYYPESL 461
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 494 NLACWVFALLCTSTVPSKSIT-FTNGVWAKKTNLVGETSNSSLETRSA 354
N CW+F + P++S++ FT+G+ AK+ NL+ + +++ S+
Sbjct: 215 NFVCWLFDNM-EKDAPTESVSNFTDGINAKQLNLMPVLDSPTIDFLSS 261
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.3 bits (60), Expect = 0.73
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = -1
Query: 476 FALLCTSTVPSKSITFTNGVWAKKTNLVGETSNSSLETRSAPREE*HRLTDDSRIYRFGS 297
F++ +S +P +I FTN + + T SNS ++ P + + R +
Sbjct: 1298 FSVATSSDIPKANIDFTNDISTQNTFPASPVSNSGFSRQTYPNISQRQGVNMLSHKRKSA 1357
Query: 296 GTLKTAFDLMTTSLSSLGWKNPISAAIAS 210
T F + S+ G PIS++I++
Sbjct: 1358 STSDRRF---VNASSTSGMNMPISSSISA 1383
>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 188 LMRYLTEVLCPCFFLSRSRQASPLNIYGESLLVGYVTVV 72
L+R+ CP +F+ +S + S + + S L GY +V
Sbjct: 39 LVRHNALTFCPYYFIEKSGKGSVVYFHPTSDLCGYKNIV 77
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = +1
Query: 1 NTPEFGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRY 180
+ P F + S V SR + L +T PT+ + Y EA L + K +
Sbjct: 734 SNPAFAKFVSDVERLKESRKLELNGYLTKPTTRLARYPLLLEAVLKYTDEGNPDKQDIPK 793
Query: 181 LINI----SNNRNQEAIAAEIGFFHPRLDKEVVIK 273
+INI + N E+ AE F L++++V K
Sbjct: 794 VINIVRGFLSRLNVESGKAENKFNLFHLNQQLVFK 828
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 494 NLACWVFALLCTSTVPSKSITFTNGVWAK--KTNLVGETSNSSLETRSAP 351
N A W AL T VPS ++T T + K K+ V ++LET S P
Sbjct: 28 NGATWASALQSTKDVPSHALTKTIVLKPKTAKSQTVVPIILAALETTSTP 77
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 25.4 bits (53), Expect = 5.2
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = +1
Query: 19 NYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISN 198
N + V P+ A T TYP+ S + S +A +DL K + K S +
Sbjct: 214 NVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASKDASIDLSKPLR--KWSPEEENKLCK 271
Query: 199 NRNQEAIAAEIGFFHPRLDKEVVIKSNA 282
N E AA F P ++VV K+ +
Sbjct: 272 YYNSEIHAA--SFVLPTFARDVVDKATS 297
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 440 SITFTNGVWAKKTNLVGET 384
S+T TN +W KT LV ++
Sbjct: 147 SVTLTNPIWVVKTRLVTQS 165
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 313 ILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFVKVI 438
+L SV+L +S G V LLL + F+F+A P V ++
Sbjct: 207 LLALSVTLVNSGSGVRAVYILLLALGWCLFLFIAIKPLVYLL 248
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Frame = -1
Query: 329 TDDSRIYRFGSGTLKTAF----DLMT---TSLSSLGWKNPISA 222
T+DSR+Y + S T K+ + +LM LS L WK +A
Sbjct: 41 TEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATA 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,474
Number of Sequences: 5004
Number of extensions: 47849
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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