Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0137 - 31937541-31939892                                         32   0.24 
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    29   3.0  
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    27   6.9  
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41...    27   9.1  
05_04_0290 + 19883904-19885109                                         27   9.1  
01_06_1388 + 36957588-36957703,36957825-36957987                       27   9.1  

>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 151 KQGHKTSVRYLINISNNRNQEAIAAEIGFFHP--RLDKEVVIKSNAVFKVPEPNRYILES 324
           K G   S R +  + NNR+  A  A I  +    R D+ + +  + +   PEPN Y L +
Sbjct: 356 KIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAA 415

Query: 325 SVSLCHS 345
            +S+C S
Sbjct: 416 VLSVCAS 422


>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 311 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 210
           +R G  T   AFD MT   +S+   NP+ AA++S
Sbjct: 72  FRGGVATRSVAFDEMTPRRASVDVPNPLRAALSS 105


>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -3

Query: 306 IWFRDLEDCVRLDDHLLIKSRVEESDFGSNSFLIPIIGDVDEVSNRGLVSLFLLIQVEAG 127
           +W  D +   ++ D+L   +++ E  F  NSF  PI   +  +SN  L SL +   V   
Sbjct: 177 LWASDNDFTGKIPDYLGTLTKLVELRFQGNSFQGPIPASLSNLSN--LTSLRIGDIVNGS 234

Query: 126 LSAEYIRRVTA 94
            S  +I  +T+
Sbjct: 235 SSLAFISNLTS 245


>09_01_0020 +
           413723-413738,413867-413934,414849-415144,415275-415400,
           415484-415566,416514-416628,416755-416847,416963-417021,
           417609-417684,417812-417901,418050-418202,418294-418480,
           418752-418839,419077-419125,419233-419329
          Length = 531

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 91  TSSDSPYIFSGEACLDLDKKKQG 159
           TSSD  YIF+G    D+++K +G
Sbjct: 392 TSSDERYIFTGALETDIEQKNRG 414


>05_04_0290 + 19883904-19885109
          Length = 401

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +1

Query: 253 DKEVVIKSNAVFKVP-EPNRYILESSVSLC--HSSL-GADRVSKLLLDVSPTK 399
           D  VV     + ++P EP+  +L   ++ C  H  +  A+R+SK L+ +SP+K
Sbjct: 296 DGRVVAAVKLIEEMPFEPDEAMLGGVLAACRVHGEMEAAERISKKLMGMSPSK 348


>01_06_1388 + 36957588-36957703,36957825-36957987
          Length = 92

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 151 SSYPGRGRPLR*IYTESHCWLGTLQWSLE 65
           SSYP   R  R     +H WLG  Q+S+E
Sbjct: 48  SSYPSMTRSNRAYRLATHAWLGPGQFSVE 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,024
Number of Sequences: 37544
Number of extensions: 329638
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)