Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1) 30 1.0
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 29 1.8
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_40133| Best HMM Match : Tat (HMM E-Value=1.4) 29 3.1
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 29 3.1
SB_36466| Best HMM Match : Tat (HMM E-Value=1.4) 29 3.1
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.4
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 27 9.4
>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1013
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 86 TQPAVTLRIYSAERPASTWIRRNRDTRPLLDTSSTSPIIGIRKLLL 223
T+PA TL I+ E PA+ I R+T L PI+ +R+ +L
Sbjct: 852 TRPAYTLIIHERETPAALIIIHARETNAALIIIHLLPIVRVRETVL 897
>SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)
Length = 325
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 452 VPSKSITFTNGVWAKKTNLVGETSNSSLETRSAPREE*HRLTDDSRIYRFGSGTLK 285
+PSK+ + +W+++ L S+S + APR H SR+Y F GTL+
Sbjct: 155 IPSKNGGESAPLWSQRQELHPPLSDSPCQ---APRYNGHSTITGSRLYYFAMGTLR 207
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 211 EAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPN 306
EA+ AEI P++++EVV++S A EP+
Sbjct: 523 EALKAEIDALKPKIEEEVVVQSAAPVAAGEPD 554
>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
Length = 450
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 268 IKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFVKVIDLE 447
++S AV + P P + +S + S + S +SP+ F+AQ+P +
Sbjct: 178 VQSPAVMRAPTPAPHPSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTP 237
Query: 448 GTVDVQSKA 474
GT++VQS A
Sbjct: 238 GTLNVQSPA 246
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/71 (23%), Positives = 27/71 (38%)
Frame = +1
Query: 25 ASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNR 204
+SG PS T +Y + + Y GE C+D+D+ G T + +N
Sbjct: 641 SSGAHTCAPSGSTCTNTVGSYTCACNVGYTGDGETCVDIDECSAGSHTCAPSVSTCTNTV 700
Query: 205 NQEAIAAEIGF 237
A G+
Sbjct: 701 GSFTCACNAGY 711
>SB_40133| Best HMM Match : Tat (HMM E-Value=1.4)
Length = 160
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 417 NTICKGYRLRRNSGRAKQGEDPAGQVEVQASG 512
N IC R RR S +AK+ D QVE + G
Sbjct: 97 NAICSRRRRRRTSAKAKRKIDTQSQVEFEELG 128
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 13 FGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINI 192
F N S +V+ P R + T VT+ T+ + + L ++ + T V
Sbjct: 1519 FPNTESSLVYTKPQRPLTANTFVTFQTTQVEQLVKTHNE--GLPRRSRDDDTGVDENAGD 1576
Query: 193 SNNRNQEAIAAEIGFFHPRL--DKEVVIK 273
++ + ++ A +GFFH + D++ +K
Sbjct: 1577 DDDDDDDSDAPALGFFHEQFSPDRDQYVK 1605
>SB_36466| Best HMM Match : Tat (HMM E-Value=1.4)
Length = 102
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 417 NTICKGYRLRRNSGRAKQGEDPAGQVEVQASG 512
N IC R RR S +AK+ D QVE + G
Sbjct: 39 NAICSRRRRRRTSAKAKRKIDTQSQVEFEELG 70
>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 416 WAKKTNLVGETSNSSLETRSAPREE 342
W K +++ ++SNS+LE SA RE+
Sbjct: 97 WLKDGHVITDSSNSTLEIESASRED 121
>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 376
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 295 PEPNRYILESS-VSLCHSSLGADRVSKLLLDVSPTKFV 405
P+P R+I++ V+ HS V K +SPT FV
Sbjct: 101 PDPRRHIIKQEHVTAAHSQSSPSTVWKAWAPLSPTSFV 138
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 66 SRDHCNVPNQQ*LSVYIQRRGLPRPG*EETG 158
S C VPN Q + I++ G+ R EETG
Sbjct: 154 SSTDCQVPNPQFIKSQIEKSGIARSLVEETG 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,981,028
Number of Sequences: 59808
Number of extensions: 365076
Number of successful extensions: 823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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