Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    27   6.2  
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    27   6.2  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    27   8.1  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    27   8.1  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    27   8.1  

>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 4   TPEFGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEA 129
           TP F  +      Y P+    L TT T  T+SD+P + S  A
Sbjct: 30  TPSFNTFKYSPSSYTPNISRNLNTTSTGSTTSDTPKLSSSSA 71


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +2

Query: 128 PASTWIRRNRDTRPL--LDTSSTSPIIGIRKLLLP----KSDSSTR 247
           PA   +   +D +PL  L    TSP+I    LLLP    K DSST+
Sbjct: 346 PAPLQVLNLKDLKPLPPLANIQTSPVIQAANLLLPVAALKKDSSTQ 391


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +2

Query: 128 PASTWIRRNRDTRPL--LDTSSTSPIIGIRKLLLP----KSDSSTR 247
           PA   +   +D +PL  L    TSP+I    LLLP    K DSST+
Sbjct: 344 PAPLQVLNLKDLKPLPPLANIQTSPVIQAANLLLPVAALKKDSSTQ 389


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/90 (24%), Positives = 40/90 (44%)
 Frame = +1

Query: 109 YIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 288
           ++ + E+   LD        S +YL++I+     E I  E+       D +++I+  A F
Sbjct: 415 FLENSESMEVLDITDLSCNKSGKYLLSINYQDTSETIFWEVAVESDYPDVQLIIREPASF 474

Query: 289 KVPEPNRYILESSVSLCHSSLGADRVSKLL 378
           KV     Y+L + +++   S     V  LL
Sbjct: 475 KVFGHQFYLLGTHLNIDCVSTSIPLVDALL 504


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/90 (24%), Positives = 40/90 (44%)
 Frame = +1

Query: 109 YIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 288
           ++ + E+   LD        S +YL++I+     E I  E+       D +++I+  A F
Sbjct: 415 FLENSESMEVLDITDLSCNKSGKYLLSINYQDTSETIFWEVAVESDYPDVQLIIREPASF 474

Query: 289 KVPEPNRYILESSVSLCHSSLGADRVSKLL 378
           KV     Y+L + +++   S     V  LL
Sbjct: 475 KVFGHQFYLLGTHLNIDCVSTSIPLVDALL 504


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 311 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 210
           YR+     KTA + +  +L+S+GW  P++ A+ S
Sbjct: 860 YRYHRSEYKTAQEKVADTLASVGW--PVTQAVCS 891


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,631
Number of Sequences: 27780
Number of extensions: 268013
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)