Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    27   5.8  
At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family...    27   7.7  
At3g06020.1 68416.m00687 expressed protein ; expression supporte...    27   7.7  

>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 43   YLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYL-INISNNRNQ 210
            Y   R      TVT P SS S      +ACL +D   +G K   RYL +N   N  Q
Sbjct: 1241 YFTYRAYGDSLTVTLPRSSLSQSFLRFKACLVVDPLSEG-KGFYRYLEVNFGFNGKQ 1296


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 58  VMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAA 225
           V  + T   Y  S  S      E C ++ KKK+   + V  ++ + N RN E   A
Sbjct: 393 VCPIGTDTFYNCSESSCSFVLHETCANISKKKRHFLSPVPLVLCLQNQRNTETCNA 448


>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
           protein contains proline-rich protein domains,
           INTERPRO:IPR000694
          Length = 189

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 479 VFALLCTSTVPSKSITFTNGVWAKKTNLVGETSN 378
           + ALLC  ++P+ ++  T   W K ++L    +N
Sbjct: 7   IVALLCLVSLPNPTVGSTKKPWPKPSDLANHNNN 40


>At3g06020.1 68416.m00687 expressed protein ; expression supported
           by MPSS
          Length = 300

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 253 DKEVVIKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLL 378
           DKE   K+  +F+ P   R + + S++LC  SLG++  S ++
Sbjct: 90  DKEK--KTLPLFQSPSSRRTLSDESLALCTESLGSETGSDII 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,847
Number of Sequences: 28952
Number of extensions: 259670
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)