Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 140 2e-34
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 81 1e-16
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 71 1e-13
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 70 2e-13
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 69 3e-13
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 52 5e-08
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 50 2e-07
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 5.2
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 6.8
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 9.0
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 140 bits (338), Expect = 2e-34
Identities = 71/146 (48%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Frame = -3
Query: 519 QYKYGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYC 340
+YK G +P +L +R+A+I+QV TQ A MRPLG +M L+A DDE GP +K DP+G+Y
Sbjct: 100 EYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYI 159
Query: 339 SYKAVAAGAKTVDGNAYLEKKLKRRXDLST-DDAIQLAISCLSQVLSVDFKSSEIEIGVV 163
YKA +AG K + +LEK+ K+ S D ++ I L LS DFKS+E++IGVV
Sbjct: 160 GYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLSTDFKSTELQIGVV 219
Query: 162 SKDNPKFRVLTETEIDRHLTAIAEKD 85
D P FRVL+ EI+ HL +IAEKD
Sbjct: 220 EDDKP-FRVLSVEEIEAHLQSIAEKD 244
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 80.6 bits (190), Expect = 1e-16
Identities = 45/117 (38%), Positives = 61/117 (52%)
Frame = -3
Query: 510 YGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYK 331
Y P IL + IA + Q TQ+ +RP G S+ L+A DE GP Y+ DPSG Y ++K
Sbjct: 101 YNEYPPTKILVQEIASVMQESTQSGGVRPFGVSL-LVAGMDEKGPSLYQVDPSGTYFAWK 159
Query: 330 AVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVS 160
A A G + +LEK+ +L DDA+ AI L + + IEI VVS
Sbjct: 160 ATAIGKSSTAAKTFLEKRY--NDELELDDAVHTAILALKETFEGELTEDNIEIAVVS 214
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 70.5 bits (165), Expect = 1e-13
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = -3
Query: 498 IPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYD-DEAGPCXYKTDPSGYYCSYKAVA 322
+ + L R +A + Q YTQ+ +RP G S ++ +D + P Y+T+P+G Y ++KA A
Sbjct: 103 VSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATA 162
Query: 321 AGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVV 163
G + YLEK K LS D+ I LA+S L +V V S IE+ ++
Sbjct: 163 IGRASKAAREYLEKNWKE--GLSRDETIHLAVSSLLEV--VQTASGNIELAIM 211
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 69.7 bits (163), Expect = 2e-13
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = -3
Query: 498 IPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYKAVAA 319
IPV L ++A+ +Q+ TQ RP G ++I YD E+GP + PSG Y +
Sbjct: 103 IPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYD-ESGPHLLEFQPSGLVLEYLGTSM 161
Query: 318 GAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSE--IEIGVVSKDNPK 145
G+++ Y+E+ L D S ++ I A+ L LS D + +E + I V+ KD K
Sbjct: 162 GSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDE-K 220
Query: 144 FRVLTETEIDRHLTAIAEK 88
+ + + + L + +K
Sbjct: 221 YTLYDQNDTKEWLDKLGDK 239
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 69.3 bits (162), Expect = 3e-13
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = -3
Query: 510 YGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYK 331
+ E+P L RR+ D+ Q YTQ +RP G S + +D G ++++PSG Y S++
Sbjct: 101 FNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQ 160
Query: 330 AVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVL-SVDFKSSEIEIGVVSKD 154
A + G + + + ++ K D++ D+A +A+ LS+ L S +IE ++KD
Sbjct: 161 ANSIGGNSTSVQSLMRQEYK--DDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITKD 218
Query: 153 NPKFRVL 133
K +++
Sbjct: 219 TTKNKMV 225
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 52.0 bits (119), Expect = 5e-08
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = -3
Query: 510 YGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYK 331
YGS IP ++ R+ + Q++T + +RP G + YD E GP Y +P+G Y Y
Sbjct: 102 YGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYN 160
Query: 330 AVAAGAKTVDGNAYLEK 280
AAG LEK
Sbjct: 161 GAAAGKGRQVARNELEK 177
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 50.0 bits (114), Expect = 2e-07
Identities = 31/104 (29%), Positives = 55/104 (52%)
Frame = -3
Query: 429 RPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKRRXDLST 250
RP G ++ LIA DE GP Y ++PSG Y Y+A A G+ + + L K+ + D++
Sbjct: 136 RPFGVAL-LIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHK--DMTL 192
Query: 249 DDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDNPKFRVLTETEI 118
++A L + L QV+ S +++ V+ + F + + E+
Sbjct: 193 EEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEG-GFHIYNDEEM 235
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 224 LVCLKCCLSTSSPLRLRLVLSAKIILSFGC*LKLKST 114
+ CL+ +S + PL +L K+I+ C LK T
Sbjct: 1046 IYCLRVLISENIPLNQGCLLPIKVIIPDNCFLKPSET 1082
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 229 GKLNRIIGAEVXASF*FLFEISVSINCLSTSS 324
G L +IIGA V A+ F +I+ + C S ++
Sbjct: 118 GILQKIIGAHVLANDGFAIDITGKVVCFSVNT 149
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 70 FNLPLILFSDCREMSVDFSFSQHPKLRIIFA 162
FN+ + S+ + V FSFS+H II+A
Sbjct: 100 FNVKIHFPSNVMKDGVAFSFSEHSDTTIIYA 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,528
Number of Sequences: 5004
Number of extensions: 29518
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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