Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)           201   2e-52
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   9e-11
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  57   1e-08
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            34   0.082
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             31   0.58 
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 30   1.3  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score =  201 bits (491), Expect = 2e-52
 Identities = 90/145 (62%), Positives = 115/145 (79%)
 Frame = -3

Query: 519 QYKYGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYC 340
           +YK+G EIPV +L +RIADISQVYTQNAEMRPLGC M+LI  D+E GP  YKTDP+GY+C
Sbjct: 80  KYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGIDEEKGPQLYKTDPAGYFC 139

Query: 339 SYKAVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVS 160
            +KA + G K  + N++LEKK+K++   + ++ ++ AISCLS VLS DFK SE+E+GVVS
Sbjct: 140 GFKACSVGVKQTEANSFLEKKVKKKHAWTFNETVETAISCLSSVLSADFKPSELEVGVVS 199

Query: 159 KDNPKFRVLTETEIDRHLTAIAEKD 85
            DNP+FR LTE EID HL AIAE+D
Sbjct: 200 MDNPRFRKLTEAEIDTHLVAIAERD 224


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 27/35 (77%), Positives = 32/35 (91%)
 Frame = -3

Query: 519 QYKYGSEIPVHILXRRIADISQVYTQNAEMRPLGC 415
           +YK+G EIPV +L +R+ADISQVYTQNAEMRPLGC
Sbjct: 43  KYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLGC 77


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = -3

Query: 498 IPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYKAVAA 319
           + +  + R IA + Q YTQ+   RP G S +++ +D +  P  Y+TDPSG Y ++K V +
Sbjct: 104 VTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQS 163

Query: 318 GAKTVD 301
           G K ++
Sbjct: 164 GGKNIE 169


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = -3

Query: 387 EAGPCXYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQV 208
           + GP  ++T PS  Y   KA+A GA++     YLEK L    D   ++ I+  +  L + 
Sbjct: 1   DMGPHIFQTCPSANYFDCKAMAIGARSQSARTYLEKYLDAFGDCEPEELIKHGLKALRET 60

Query: 207 L--SVDFKSSEIEIGVVSKD 154
           L    +  +    IG+V KD
Sbjct: 61  LPNEQELTTKNCSIGLVGKD 80


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 510 YGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLI 400
           YGS IP+  L  R++     +T  + MRP GC + ++
Sbjct: 232 YGSPIPLKYLVNRVSGFIHAFTLYSAMRPFGCRIYVV 268


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 510  YGSEIPVHILXRRIADISQV--YTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYC 340
            YG+   ++ +   I D+     Y      RPLGC     +Y D  G    K  PSGY+C
Sbjct: 1948 YGNCSALYDIHTGIGDVCPTGHYCPIGSARPLGCPAG--SYQDNKGMSHCKDCPSGYFC 2004


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 227 SLVCLKCCLSTSSPLRLRLV 168
           +L+ L+CCLS  SP+R RLV
Sbjct: 137 ALISLECCLSVLSPIRHRLV 156


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 258  LSTDDAIQLAISCLSQVLSVDFKSSEI 178
            +ST    QLA  CL+Q+  VDFK  EI
Sbjct: 1451 MSTGQRQQLAYKCLTQI--VDFKQQEI 1475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,191,771
Number of Sequences: 59808
Number of extensions: 218986
Number of successful extensions: 590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)