Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304E04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 156 1e-38
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 83 1e-16
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 73 9e-14
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 57 9e-09
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 39 0.002
AY079165-1|AAL86012.1| 585|Caenorhabditis elegans NADPH-depende... 32 0.22
AL132858-12|CAB60480.1| 585|Caenorhabditis elegans Hypothetical... 32 0.22
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 4.7
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 4.7
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 4.7
Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC024881-3|AAK71413.1| 306|Caenorhabditis elegans Serpentine re... 27 8.1
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 156 bits (378), Expect = 1e-38
Identities = 66/145 (45%), Positives = 103/145 (71%)
Frame = -3
Query: 519 QYKYGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYC 340
+YK G ++P +L +++AD++Q YTQNAEMR LGC+++ I+YDDE GP Y+ DP+GYY
Sbjct: 102 KYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYR 161
Query: 339 SYKAVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVS 160
K V+ G K + ++LEKK+K++ +L++ +AI+LAI L L +D +S ++E+ VV+
Sbjct: 162 GMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSLGIDVRSKDLEVVVVT 221
Query: 159 KDNPKFRVLTETEIDRHLTAIAEKD 85
KDN KF LT +++ HL IA +D
Sbjct: 222 KDNSKFTKLTSDQVEHHLNQIANRD 246
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 83.0 bits (196), Expect = 1e-16
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = -3
Query: 510 YGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAG-PCXYKTDPSGYYCSY 334
YG E+P L IA + Q YTQ+ +RP G S+++ +D G P ++ DPSG Y ++
Sbjct: 97 YGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAW 156
Query: 333 KAVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVSKD 154
KA A G V+ +LEK+ +L DD I A+ L + V + +E+ V +
Sbjct: 157 KATALGKNDVNAKTFLEKRFSEALEL--DDGIHTALLTLRESFDVGMNENNVEVAVCNST 214
Query: 153 NPKFRVLTETEIDRHL 106
F LT+ ++ HL
Sbjct: 215 G--FHRLTKQQVHDHL 228
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 73.3 bits (172), Expect = 9e-14
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Frame = -3
Query: 510 YGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYK 331
YG E+PV L + + + Q YTQ RP G S++ I +D G Y++DPSG Y +K
Sbjct: 101 YGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWK 160
Query: 330 AVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDN 151
A G+ L+++ K + ++A QLAI L + L V S ++E+ V+++ +
Sbjct: 161 ATCIGSNHQAAVTLLKQEYK---SPNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLTRRD 217
Query: 150 PK--FRVLTETEIDRHLTAIAEKD 85
K LT E+D + +K+
Sbjct: 218 GKTVLEELTTKEVDALIAEHEKKE 241
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 72.5 bits (170), Expect = 2e-13
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = -3
Query: 516 YKYGSEIPVHI--LXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYY 343
YK E PV + + R IA+ Q +TQ+ RP G SM++ +D + P +KT+PSG Y
Sbjct: 95 YKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAY 154
Query: 342 CSYKAVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVV 163
Y A A G YLE++ + ++L + L+QV V S IEI V+
Sbjct: 155 YEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQV--VPPGSQNIEIAVM 212
Query: 162 SKDNPKF--RVLTETEIDRHLTAI 97
K N + RVL+ EI+ L +
Sbjct: 213 KKVNDELQQRVLSTEEIEALLKVV 236
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 56.8 bits (131), Expect = 9e-09
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = -3
Query: 519 QYKYGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYC 340
++ Y +P+ L + Q TQ RP G +++ YD + G +TDPS
Sbjct: 96 RWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPSAEVV 154
Query: 339 SYKAVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVD--FKSSEIEIGV 166
S + GA++ YLE+ + + + I A+ L L + + IG+
Sbjct: 155 SMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGI 214
Query: 165 VSKDNPKFRVLTETEIDRHLTAIA 94
V KD+P F +L + ++ HL ++
Sbjct: 215 VGKDSP-FSLLEDAQVAVHLNQVS 237
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 39.1 bits (87), Expect = 0.002
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Frame = -3
Query: 510 YGSEIPVHILXRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGPCXYKTDPSGYYCSYK 331
Y +P+ + +A+ ++T RP G ++++ + G + +PSG YK
Sbjct: 103 YREPMPIQNIANSVAEYIHIHTLGIS-RPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYK 161
Query: 330 AVAAGAKTVDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVD-FKSSEIEIGVVSKD 154
A A G A +E KLK +L + ++ A + V + K+ +IE+G V +
Sbjct: 162 AWAVGKHRQAAKAEIE-KLKIE-ELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWVGEQ 219
Query: 153 -NPKF-RVLTETEIDRHLTAIAEKD 85
N K+ V +E AIA+ D
Sbjct: 220 TNGKYEEVPSEVVTAAEEWAIAKLD 244
>AY079165-1|AAL86012.1| 585|Caenorhabditis elegans NADPH-dependent
flavin reductase protein.
Length = 585
Score = 32.3 bits (70), Expect = 0.22
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 52 HRQLF*FNLPLILFSDCREMSVDFSFS-QHPKLR-IIFADNTNLNLRGLEVDRQHLRQTR 225
HR LF + P ILF CR D+ FS + P+L + + + G +V QH
Sbjct: 471 HRSLFSAHFPGILFFGCRSEHHDYYFSDEWPELSGVAVIPAFSRDTDGRKVYVQHKMGEN 530
Query: 226 DGKLNRI--IGAEV 261
GK+ R+ +GA+V
Sbjct: 531 AGKIKRMLDLGAQV 544
>AL132858-12|CAB60480.1| 585|Caenorhabditis elegans Hypothetical
protein Y113G7A.8 protein.
Length = 585
Score = 32.3 bits (70), Expect = 0.22
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 52 HRQLF*FNLPLILFSDCREMSVDFSFS-QHPKLR-IIFADNTNLNLRGLEVDRQHLRQTR 225
HR LF + P ILF CR D+ FS + P+L + + + G +V QH
Sbjct: 471 HRSLFSAHFPGILFFGCRSEHHDYYFSDEWPELSGVAVIPAFSRDTDGRKVYVQHKMGEN 530
Query: 226 DGKLNRI--IGAEV 261
GK+ R+ +GA+V
Sbjct: 531 AGKIKRMLDLGAQV 544
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = -3
Query: 258 LSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDNPKFRVLTETE-----IDRHLTAIA 94
+ +++ +L +++V+ + S + V+S + K ++L ETE +DRHLT IA
Sbjct: 1388 VGSEELEELKRKQMNRVMDLQEALSAAQNKVISLEKAKGKLLAETEDARSDVDRHLTVIA 1447
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = -3
Query: 258 LSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDNPKFRVLTETE-----IDRHLTAIA 94
+ +++ +L +++V+ + S + V+S + K ++L ETE +DRHLT IA
Sbjct: 1388 VGSEELEELKRKQMNRVMDLQEALSAAQNKVISLEKAKGKLLAETEDARSDVDRHLTVIA 1447
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = -3
Query: 258 LSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDNPKFRVLTETE-----IDRHLTAIA 94
+ +++ +L +++V+ + S + V+S + K ++L ETE +DRHLT IA
Sbjct: 1388 VGSEELEELKRKQMNRVMDLQEALSAAQNKVISLEKAKGKLLAETEDARSDVDRHLTVIA 1447
>Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical
protein K05C4.5 protein.
Length = 656
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 145 LRIIFADNTNLNLRGLEVDRQHLRQTRDG 231
L ++ DN+ LN+ G++ LR+TR+G
Sbjct: 208 LAMVSTDNSTLNIAGVDPRITELRETRNG 236
>AC024881-3|AAK71413.1| 306|Caenorhabditis elegans Serpentine
receptor, class sx protein6 protein.
Length = 306
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 306 VDGNAYLEKKLKRRXDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDNPKFRVLTE 127
V GNA L + RR L T +I AI CL ++ + + + ++ P+ + T+
Sbjct: 25 VFGNASLIYLIARRKKLQTKSSILQAIQCLCHIICLIGTQVDTVLTILDIKLPRNQCYTK 84
Query: 126 TEI 118
I
Sbjct: 85 VSI 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,814,288
Number of Sequences: 27780
Number of extensions: 168781
Number of successful extensions: 448
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -