Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304E03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   1.5  
U49947-1|AAA93420.2|  232|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
 Frame = -1

Query: 512 FISIQFYFNA---ELLDISFGV 456
           FISI FYF+    ELLD+SFG+
Sbjct: 5   FISIYFYFSTVLIELLDVSFGI 26


>U49947-1|AAA93420.2|  232|Caenorhabditis elegans Hypothetical
           protein C30G4.2 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 471 HKFWCNYQYVE 439
           HKFWCNYQ  E
Sbjct: 182 HKFWCNYQLKE 192


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 296 LGLMHIIKLYHISVILILRLAFQVNSSID 210
           +GL +I K+    ++L+  L F+VNS +D
Sbjct: 123 IGLENITKMIRYIILLVYFLIFEVNSQLD 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,432
Number of Sequences: 27780
Number of extensions: 202746
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)