Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D12f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   2.2  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   2.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   2.9  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 KMNNKIQLVNFYLKNCSSNTQLWLSK*TILFF*VIV 346
           ++NN +Q ++  LKN  S+    L   ++ FF  ++
Sbjct: 109 RLNNNLQYIDEVLKNRDSHETNLLRNVSVQFFVYVI 144


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 KMNNKIQLVNFYLKNCSSNTQLWLSK*TILFF*VIV 346
           ++NN +Q ++  LKN  S+    L   ++ FF  ++
Sbjct: 109 RLNNNLQYIDEVLKNRDSHETNLLRNVSVQFFVYVI 144


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 130 YKILVMLTWNLLFLTK*QETIV*GNV*KYSNKFFFIKNEQ*NPVG*FLFEK 282
           YKI V+ ++ + F +     +V  NV + S  F+++      P+   +F+K
Sbjct: 33  YKIFVVFSFAVTFFSAWICALVNYNVSEISENFYYLPAMSTGPLKYAIFQK 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,068
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)