Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    31   0.079
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    28   0.97 
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   1.3  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.2  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   9.0  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   9.0  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -1

Query: 299 VYYYYNFSNKN*PTGFYCSFLIKKNLF-EYFQTLP*TMVSCYLVKNKRFHVSITSILYVC 123
           +++Y +   +     F  +FL+  + +  +F+     ++S  L    R HVS+ + +  C
Sbjct: 285 LHFYADHLTELTDVSFQGAFLVSSSEWINFFKKRGSKLISLELTDTARIHVSVINAIVDC 344

Query: 122 CFSYL*VDFKK*FYIEHE 69
           C + + ++  + FY++ E
Sbjct: 345 CPNLISLNLSRIFYLDDE 362


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -1

Query: 500 ITLKLYIMQNLFVHKNDVIVFLYLLKVIVNILRPIVSK-RYFYPLLKVAFGTKRLLKKIV 324
           I  KLY   N+F+ K    V   +   I+N  R I S+ ++++ +LK   G    L  I+
Sbjct: 382 IRTKLYNSNNVFLDKGQKGVISNIQTKILNFERAIPSEMKHYFEILKAGNGLPEEL-DII 440

Query: 323 WFILITTTVYYYYNFSN 273
                T  V  Y ++ N
Sbjct: 441 KQHFFTACVEIYLSYCN 457


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 380 FYPLLKVAFGTKRLLKKIVWFILITTTVYYYYNFSNKN*PTGFYCS 243
           +Y L KV    ++LL KI WFIL    V Y+ N+ +++     Y S
Sbjct: 14  YYGLNKVE---QKLLIKIDWFILSYCCVSYFINYLDRSSINNAYLS 56


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 455 NDVIVFLYLLKVIVNILRPIVSKRYFYPLLKVA 357
           N   +F+Y L ++V +    V K  FYPL KVA
Sbjct: 584 NRFTMFIYYLCILV-LATYYVMKHNFYPLRKVA 615


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 65  VLHVRYKITS*NLLINTKNNRRTKY 139
           VLH+   +TS +L I T NN+R+++
Sbjct: 518 VLHLGRTVTSVSLKIVTVNNKRSRH 542


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 279 KIVVVIHSCGYQNKPYYFFK 338
           K+V++ HS G Q   YYFFK
Sbjct: 286 KVVLISHSMGSQ-VTYYFFK 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,360
Number of Sequences: 5004
Number of extensions: 44807
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)