Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06)                 29   1.8  
SB_41454| Best HMM Match : FLYWCH (HMM E-Value=3.7)                    27   7.1  
SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)             27   7.1  
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06)
          Length = 628

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 401 PIVSKRYFYPLLKVAFGTKRLLKKIVWFILITTTVYY 291
           P++++R++YP   VAF    +  K V +++   TV+Y
Sbjct: 224 PMLARRWYYPAFTVAFLVLLVGIKSVLYVVAVCTVFY 260


>SB_41454| Best HMM Match : FLYWCH (HMM E-Value=3.7)
          Length = 113

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 200 P*TMVSCYLVKNKRFHVSITSILYVCCFS 114
           P  ++S YL K     +S + I Y+CCFS
Sbjct: 61  PVIVISSYLFKQGFHRLSASYIPYLCCFS 89


>SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)
          Length = 382

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 242 FLIKKNLFEYFQTLP*TMVSCYLVK 168
           F I  N+++  +TLP T+ +C+ VK
Sbjct: 58  FFIPLNIYDLLRTLPATVFTCHFVK 82


>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 254 FYCSFLIKKNLFEYFQTLP*TMVSCY-LVKNKRF-HVSITSILYVCCFSYL 108
           F C   + + +  Y+  L  +M+ CY ++   RF   S  S     C+SYL
Sbjct: 53  FVCYSYLSRGMIVYYSYLSPSMIVCYSILSRSRFVCYSYFSCSLFVCYSYL 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,499,788
Number of Sequences: 59808
Number of extensions: 271250
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)