Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 31 0.50
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 31 0.50
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 31 0.50
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 30 0.87
Z19157-5|CAE18055.2| 177|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical p... 27 8.1
Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical p... 27 8.1
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 8.1
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 506 TNITLKLYIMQNLFVHKNDVIVFLY 432
TN+T++LY Q VH+ND I+ LY
Sbjct: 50 TNVTVQLYFKQIQKVHENDQIITLY 74
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 506 TNITLKLYIMQNLFVHKNDVIVFLY 432
TN+T++LY Q VH+ND I+ LY
Sbjct: 50 TNVTVQLYFKQIQKVHENDQIITLY 74
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 506 TNITLKLYIMQNLFVHKNDVIVFLY 432
TN+T++LY Q VH+ND I+ LY
Sbjct: 34 TNVTVQLYFKQIQKVHENDQIITLY 58
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.3 bits (65), Expect = 0.87
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 43 HNYG--TLFRTSC-SI*NYFLKSTYKYEKQQTYKILVMLTWNLLFLTK 177
HNY TL TS S NY STY ++ YK+ V W L L K
Sbjct: 83 HNYPDTTLSSTSAPSTSNYLTTSTYSDNRRSLYKVDVEKYWEQLLLRK 130
>Z19157-5|CAE18055.2| 177|Caenorhabditis elegans Hypothetical
protein ZC84.7 protein.
Length = 177
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 512 IVTNITLKLYIMQNLFVHKNDVIVFLYLLKVIVNIL-RPIVSKRYFYPLLKVAF 354
+ + LK +N+F+ + V +F +L ++ NI+ IVSKR PLL + +
Sbjct: 9 LTPGVVLKFRPYRNVFIGISSVAIFFAILIIVENIIFLSIVSKRSI-PLLLIPY 61
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 209 QTLP*TMVSCYLVKNKRFHVSITSILYVC 123
+TLP + YL+ NK FH++ T ++ C
Sbjct: 293 KTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 209 QTLP*TMVSCYLVKNKRFHVSITSILYVC 123
+TLP + YL+ NK FH++ T ++ C
Sbjct: 293 KTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321
>Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical
protein F59A1.11b protein.
Length = 321
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 494 LKLYIMQNLFVHKNDVIVFLYLLKVIVNILRPIVSKRYFYPLL 366
L L+ + LF+ K +V LY + + + ++ PI YP++
Sbjct: 130 LMLFNLHRLFIIKKKSLVLLYSIAIPLMLIGPISDAVIAYPVI 172
>Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical
protein F59A1.11a protein.
Length = 303
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 494 LKLYIMQNLFVHKNDVIVFLYLLKVIVNILRPIVSKRYFYPLL 366
L L+ + LF+ K +V LY + + + ++ PI YP++
Sbjct: 130 LMLFNLHRLFIIKKKSLVLLYSIAIPLMLIGPISDAVIAYPVI 172
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 272 KN*PTGFYCSFLIKKNLFE 216
K+ PTGF+C F KK F+
Sbjct: 1159 KSCPTGFFCQFSAKKGQFQ 1177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,175
Number of Sequences: 27780
Number of extensions: 234125
Number of successful extensions: 537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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