Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 201 2e-52
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7) 31 0.76
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1) 29 3.1
SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 27 7.1
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02) 27 9.4
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 27 9.4
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 201 bits (491), Expect = 2e-52
Identities = 91/122 (74%), Positives = 106/122 (86%)
Frame = +3
Query: 156 VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 335
VY+FKYDSTHGRFKG+VE +DG LV+NG ++VF+ +DP IPWG+ GA+YVVESTGVFT
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876
Query: 336 TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKV 515
T +KA HL+GGAKKVIISAPSADAPMFV+GVN E YDPS V+SNASCTTNCLAPL KV
Sbjct: 877 TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936
Query: 516 IH 521
I+
Sbjct: 937 IN 938
>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
Length = 277
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 394 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 480
+PV+MP CL + K+M PLL +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222
>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 13 IFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 120
+FY I+C+KL S+D+ AL + S LL +K S
Sbjct: 29 VFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64
>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
Length = 405
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 391 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 257
D+I +A P + A A S T V S +Y+ AFP G S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219
>SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = -1
Query: 320 RLYNIFSPSFSPWNGLRVPF*ENGNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKT 141
R N+ F W GLRV + N V I N T L +I E + VK
Sbjct: 6 RAANVTKIPFDGWVGLRVKLKDAANNHEVLVPFLIANQTTDLPIIGFNVIEEIVKGYVKD 65
Query: 140 DERVIYSDHLSSLFNRSTEHQT 75
++ + S SSL++ +++ T
Sbjct: 66 EDNELNSALASSLYDVESDNVT 87
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 27.5 bits (58), Expect = 7.1
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 91 LLLKRELKWSL*MTLSSVLTIWFIFSSMIPPMAVLRAVLRFR--MDSLLLTVTKLPFSQK 264
L+L+ L +T SS LT + P +L +V+ F + L +VT+LP S K
Sbjct: 1174 LILETSPYLQLSVTQSSQLTA-SVMHLPFPGKHLLTSVMHFHASVTQLPASVTQLPVSVK 1232
Query: 265 GTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 360
L + L + + LP+ KHL T
Sbjct: 1233 HLLTSVMHLHASVTHLPASVTQLPVSAKHLPT 1264
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/81 (24%), Positives = 30/81 (37%)
Frame = -2
Query: 427 PTTNMGASALGADIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSEKTA 248
PT++ GA+ D + PP+K SV+ + T P P G G +
Sbjct: 419 PTSSPGATQGSTDGVVSAKPPTKKTTPQSVIPPGKTTAPTTKPPGSPAGSTQGPTDGVLS 478
Query: 247 ILLPLTTRNPS*TSTLPLKRP 185
P P S +P +P
Sbjct: 479 AKPPTKKTTPQ--SMIPPGKP 497
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.1 bits (57), Expect = 9.4
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +1
Query: 184 MAVLRAVLRFRMDSLLLTVTKLP-FSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 360
+A L+ V+ ++ + L +T L + L P L +L L V +PLQ+ LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435
Query: 361 WREVLKKLLYQLP--VLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTVLP 501
+VL L LP VL+P +L L + +L Q+L PQ + P
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP 484
>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
Length = 376
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 261 ERDPKAIPWGKAGAEYVVESTGVFTTTDKASA 356
E+DP PW ++++ G TT DKA A
Sbjct: 221 EQDPPPPPWTAPEPDFLLTLPGPDTTVDKARA 252
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 215 LNLNTALKTAMGGIILEKINHIVKTDERVIYSDHLSSL 102
+N++ K GGI+LE IN+++ +R + L SL
Sbjct: 149 VNIDGDEKLCRGGIVLEYINNLLLKGQRKQHKSFLGSL 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,739
Number of Sequences: 59808
Number of extensions: 354491
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -