Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.42 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.0  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   3.0  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   6.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 388 SNCFANESTTGSESRPAEKIRRETQRADAWVRLHVDLF 275
           S+C  +ES    ES PA K   E    D+W+    ++F
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWMIASCNIF 336


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 104 PPLTTPRILIMQEPVTVDAVDTSLRIHQIQ*PLH*MP 214
           PP+ +PR     +PV V+A+  S  +   Q PLH  P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  IRKYMKSASERYFDKAMRHDNRLI 99
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 16  GLESIRKYMKSASERYFDKAMRHDNRLIVAA 108
           G  S+RK +  A   YF + +  D  ++V A
Sbjct: 71  GRPSLRKALSEAYSPYFKRTLNPDTEIVVTA 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,695
Number of Sequences: 5004
Number of extensions: 33330
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)